Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq459 114 1e-20 seq1065 109 4e-19 >seq459 Length=1799516 Score = 114 bits (126), Expect = 1e-20 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || ||| | || Sbjct 774028 CAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 773969 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | || ||||| || |||| |||| ||| ||||| ||| | |||||| ||||| Sbjct 773968 TTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 773909 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| ||||| ||||||| Sbjct 773908 CTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATG 773851 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || |||| || |||||||| ||||||||| Sbjct 773850 GTCTTACCTGTCAAGGTCTTGACAAAGATCTGCATT 773815 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| ||||| || ||||||||||||| || ||| | || Sbjct 774256 CAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 774197 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 774196 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 774137 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| ||||| ||||||| Sbjct 774136 CTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATG 774079 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || || ||||||||||| Sbjct 774078 GTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 774044 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| || | |||||| || ||||| ||||| ||||||| Sbjct 774504 CAGTTACCACCCCTC--AGGCGCAGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGT 774447 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||||| || ||| | || || | || ||||| ||| | || |||| ||| |||| Sbjct 774446 AGTCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGT 774387 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | ||| || ||||| || || || ||| || | | | ||||| | Sbjct 774386 CTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACT 774329 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||| |||| ||||||||| || || |||| || |||||||| ||||||||| Sbjct 774328 GGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 774271 >seq1065 Length=1128224 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| | || ||| | ||||||| || Sbjct 373410 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGC 373469 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || | || ||| ||||| ||| | |||||||||||| |||| Sbjct 373470 TTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTG 373529 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | |||||| | |||||| || | ||||||||| || || ||| Sbjct 373530 GCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 373589 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| |||||||| Sbjct 373590 AGGGTTTTCACAAAGATCTGCAT 373612 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | || || ||||| ||||| || ||||||||||| | | Sbjct 373842 CCACCTCTCAGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 373901 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || | || ||| ||||| ||| Sbjct 373902 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGA 373961 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| |||| |||||| | | | |||||| | |||||| Sbjct 373962 ATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACC 374021 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| ||||| ||||| |||||||| Sbjct 374022 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 374068 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||| || || ||||||||||| | || ||| | ||||||| || Sbjct 373638 TGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGC 373697 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || | || ||| ||||| ||| | |||||||||||| |||| Sbjct 373698 TTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTG 373757 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | |||||| | |||||| || | ||||||||| || || ||| Sbjct 373758 GCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 373817 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| |||||||| Sbjct 373818 AGGGTTTTCACAAAGATCTGCAT 373840 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | || || ||||| ||||| || ||||||||||| | | Sbjct 374070 CCACCTCTCAGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 374129 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| || | || ||||| ||| | || |||| ||| ||||| || Sbjct 374130 AGGGTGCGCCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 374189 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || |||||| | | | || || | |||||| Sbjct 374190 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCGATGGTATCACTGGGCTCAA 374247 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||||| || || ||||| || || ||||| |||||||| ||| Sbjct 374248 CCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 374300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404700503959120