Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq459 104 2e-17 >seq459 Length=1799516 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| || |||| | ||||| || ||| Sbjct 773816 ATGCAGATCTTTGTCAAGACCTTGACAGGTAAGACCATCACCTTGGAAGTTGAGCCCAGT 773875 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| ||||| ||||| || Sbjct 773876 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 773935 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | || ||| |||||| | ||||| |||||| Sbjct 773936 CAGAGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAAC 773995 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || ||||| | || || || |||| Sbjct 773996 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCG 774030 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| | ||||| || ||| Sbjct 774044 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCCAGT 774103 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| ||||| || || || Sbjct 774104 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 774163 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | ||||| |||||| Sbjct 774164 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAAC 774223 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || |||||||| | ||| | || |||| Sbjct 774224 ATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCG 774258 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || ||||||||||| ||||| ||||| || || | || || || || ||||| ||| Sbjct 773675 ATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGAGGCTGATTTTCGCTGGCAAGCAG 773734 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | || ||| |||||| | ||||| |||||||| || || |||||||| | ||| | Sbjct 773735 CTTGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTCCATCTC 773794 Query 22426 GTTTTGCG 22433 || |||| Sbjct 773795 GTGCTGCG 773802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419326499737720