Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq459 197 3e-45 seq1065 145 1e-29 seq315 84.2 4e-11 >seq459 Length=1799516 Score = 197 bits (218), Expect = 3e-45 Identities = 175/219 (80%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||||||| || |||||||| || |||||||| || ||||| || || | | Sbjct 774033 AGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 773974 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || |||||||| |||||||| ||| Sbjct 773973 CCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCC 773914 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || |||||||||||| Sbjct 773913 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTG 773854 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || | ||||||||| || ||||||||| Sbjct 773853 ATGGTCTTACCTGTCAAGGTCTTGACAAAGATCTGCATT 773815 Score = 179 bits (198), Expect = 7e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || || ||||||||||||||||| || ||||| || || | | Sbjct 774489 AGGCGCAGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGC 774430 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||||||| Sbjct 774429 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 774370 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| |||||||| ||| |||||||| | || || ||||||||| Sbjct 774369 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTG 774310 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || | ||||||||| || ||||||||| Sbjct 774309 ATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 774271 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | ||||||| || | || || ||||| || || |||||||| || |||| Sbjct 774272 TTCCGCCCCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGG 774213 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||||||| | |||||| || || || || || || || ||||| || | Sbjct 774212 ACAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGG 774153 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| |||||||| || ||||| |||||||| ||| |||||||| | || | Sbjct 774152 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAA 774093 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||||| || || || |||||||| ||||| |||||||| Sbjct 774092 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 774044 >seq1065 Length=1128224 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | ||| || ||||| || || |||||||| || || || || || | | Sbjct 374079 AGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 374138 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || ||||| || |||||||||||| Sbjct 374139 CCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 374198 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||||||||| || | || || || | ||| Sbjct 374199 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACCTCGAGAGTG 374258 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 374259 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 374296 >seq315 Length=1270250 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/147 (73%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 9890 CATTTAGAAGTCTGCGTCAATTGCAAACACGTTGTC-GTCGGCATT--CATGACGCCCGC 9946 |||||| || ||||| || | | || |||||| || ||| || |||||| ||| Sbjct 391932 CATTTAAAATTCTGCATCCAGGGTGAAAGAGTTGTCTGTGGGCTTTGACATGACTCCCAT 391873 Query 9947 CTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAG 10006 | ||||||| || ||| || |||||||||||||| |||||| || || || ||| Sbjct 391872 CCTCTGGTATTCACCTACTCGCTTCTCGAAGAAGTTGGTCTTGCCTTCCAGAGAGATGTT 391813 Query 10007 CTCCATGAAGTCAAAGGGGTTCTCGGC 10033 |||||||| ||||| |||||||| || Sbjct 391812 TTCCATGAAATCAAAAGGGTTCTCTGC 391786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920718196263360