Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq459 113 4e-20 seq1065 100 2e-16 >seq459 Length=1799516 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || |||||||| |||||||| ||| || || || ||||||||| || || ||| Sbjct 774468 GTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCA 774409 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 774408 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 774349 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| |||| ||| | || ||||| |||| || Sbjct 774348 ACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTC 774289 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 774288 TTGACAAAGATCTGCAT 774272 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| | || | || || | ||| | || ||||| || || |||||||| ||| Sbjct 774273 ATTCCGCCCCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCG 774214 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||||||| || || ||||| |||| || | ||| ||||| || Sbjct 774213 GACAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 774154 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| |||||| ||| || Sbjct 774153 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 774094 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || ||||| ||||| || || || |||||||||||| Sbjct 774093 ACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 774043 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| | || | || || || || | || || || || || |||||||| ||| Sbjct 774045 ATGCCGCCCCTGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCG 773986 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||||||| || || |||||| | || || | ||| ||||| ||| Sbjct 773985 GACAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGA 773926 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| |||||| ||| || Sbjct 773925 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 773866 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| || || ||||| |||||||| Sbjct 773865 ACTTCCAAGGTGATGGTCTTACCTGTCAAGGTCTTGACAAAGATCTGCAT 773816 >seq1065 Length=1128224 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || |||||||| || || || ||| ||| || || || || ||| Sbjct 373644 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCA 373703 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| ||||||||||| |||||||| || || || Sbjct 373704 GCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTC 373763 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| ||| || || || | ||| | || ||||| ||||| ||| Sbjct 373764 ACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTT 373823 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 373824 TTCACAAAGATCTGCATG 373841 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || ||| ||| || || || || ||| Sbjct 373872 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCA 373931 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| ||||||||||| |||||||| || || || Sbjct 373932 GCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTC 373991 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| ||| || || || | ||| | || ||||| ||||| ||| Sbjct 373992 ACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTT 374051 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 374052 TTCACAAAGATCTGCATG 374069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || ||| ||| || || || || ||| Sbjct 373416 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCA 373475 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| ||||| ||||||||||| |||||||| || || || Sbjct 373476 GCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTC 373535 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| ||| || || || | ||| | || ||||| ||||| ||| Sbjct 373536 ACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTT 373595 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 373596 TTCACAAAGATCTGCATG 373613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419732510986656