Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq104 105 1e-17 seq998 95.1 2e-14 >seq104 Length=2005322 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| | || |||||| | || ||||| |||||||||||||||||| | || || Sbjct 1841219 GGTGAGAGAGTCGTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTCTCGGGCTCGTTTGCT 1841278 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | ||||| ||||| ||| ||| || |||||| ||||| || ||||| || |||||| Sbjct 1841279 GCTATCTTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTC 1841338 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 1841339 ATTAGCAGAGATGAGG 1841354 >seq998 Length=117795 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || || ||||||||||| ||| ||||| |||| | |||| Sbjct 100424 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 100483 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || |||||||||||| | | || | ||| ||||||| ||| | ||||| ||| Sbjct 100484 TCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGATGCCAAGGC 100543 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 100544 TCCAGGTAGA 100553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943412708810880