Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq404 152 7e-32 seq2441 127 3e-24 >seq404 Length=1135484 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| || |||||||| ||| |||| || || || || ||||| || Sbjct 1057707 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1057648 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| |||||||||||||||||||| || || |||||||||||||| || Sbjct 1057647 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 1057588 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || || | || | Sbjct 1057587 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 1057528 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || ||||| ||||||||||| || || || | | Sbjct 1057527 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCTATCATC 1057468 Query 9967 TG 9968 || Sbjct 1057467 TG 1057466 Score = 123 bits (136), Expect = 4e-23 Identities = 205/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 1059718 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1059659 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || ||||||||||| ||||||||| | |||| Sbjct 1059658 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCTGGGG 1059599 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 | ||||| | || |||| || ||||||| || || || || || | || | || Sbjct 1059598 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCGATTTCTACCATTG 1059539 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || ||||||||||| || || |||||||| || | || || | || || || | Sbjct 1059538 TTTCGCCAAAGATGGCACCTGGTCGTGGTTTTTCTACAAGGAGTCCTGGATACAGCTCCA 1059479 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || ||||| || || || || ||| Sbjct 1059478 TAGCATCTATGTCTCCATAAAGCTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCT 1059423 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | ||| ||| ||||| Sbjct 1058928 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATTTGAAAAGTG 1058869 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||| ||||||||||| || || || |||||||||||| Sbjct 1058868 TCAGGCAGAAGTGGGTGCCAGTGGTACAGGGTATTGAATTCAGCTGCAATTCGGTTCTGG 1058809 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || || || | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 1058808 TATTGGAATCGCTGGT--TGAACAGAAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 1058751 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | || || || || | | || | ||| || || || || || || Sbjct 1058750 CACTCAAGTGTTGCACGTAATCTTCAATAACAATCTTGATTGTCTCTCCTGT 1058699 >seq2441 Length=309800 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| ||||| ||||| ||||||||| |||||||||||||| ||| | | ||||| Sbjct 52583 CCGCCAAAGGTACTGGGCTTCCAGTACTCCGGGGAGCAGATGGGGTTTCCGAGAAGCCCC 52642 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || ||||| ||| | ||| | Sbjct 52643 TTCAGGGAAAAGGGAGCTCCGATCTCCACCATGCTTTCTCCGAAAATGCCGTTGGGTTGG 52702 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | ||| | || | || |||| ||| |||||||| | Sbjct 52703 GGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCCAGCGCGTCGATGTCTCCATAGAGCTCC 52762 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| ||||| |||||| ||| ||| || Sbjct 52763 TCCAGCTCTGCAGCCTTCTCCTCCTCTCCTGCA 52795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723017950459200