Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq998 84.2 3e-11 seq104 82.4 9e-11 >seq998 Length=117795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||||| ||||||| | | ||||| || |||||||| || || || || Sbjct 95272 TAGATGTTACTGGTGTAGGGCTCAATGGATTCATTATTGCCCAAGATCTGAGCAGTAGAA 95331 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || || |||||||| | |||||||||||||| | || ||| Sbjct 95332 GCAGTTGGCATGGGAGAAATGAGAAGGCTGTTTCTGACACC 95372 >seq104 Length=2005322 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 127553 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 127612 ||||||||||| ||||| ||| || ||||| || |||| |||||||| ||| || || Sbjct 1841340 ATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTCAGCCAAAAGATA 1841281 Query 127613 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| ||| ||||| ||||||||||| || || || Sbjct 1841280 GCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGAC 1841246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612905288086080