Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1065 136 9e-27 >seq1065 Length=1128224 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||||||||||||||| || ||||| |||| ||||||||||| || || | ||||| Sbjct 373856 CAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 373915 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| | | ||||||||| ||| ||| || ||| || Sbjct 373916 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTC 373975 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || |||||| || | ||||| | | || || || | ||||| || Sbjct 373976 CTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 374035 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || ||||||||||| || || Sbjct 374036 CTTGCCAGTCAGGGTTTTCACAAAGATCTG 374065 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||||||||| || |||||||| |||| ||||||||||| || || | ||||| Sbjct 373400 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 373459 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| | | ||||||||| ||| ||| || ||| || Sbjct 373460 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTC 373519 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || |||||| || | ||||| | | || || || | ||||| || Sbjct 373520 CTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 373579 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || ||||||||||| || || Sbjct 373580 CTTGCCAGTCAGGGTTTTCACAAAGATCTG 373609 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||||||||||||||| || ||||| |||| ||||||||||| || || | || || Sbjct 374084 CAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 374143 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 374144 TTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 374203 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| |||| ||| || | | || || || | ||||| || Sbjct 374204 CTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACCTCGAGAGTGATGGT 374263 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 374264 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 374293 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| ||||| ||||| || |||| ||||||||||| || || | ||||| Sbjct 373628 CAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 373687 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| | | ||||||||| ||| ||| || ||| || Sbjct 373688 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTC 373747 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || |||||| || | ||||| | | || || || | ||||| || Sbjct 373748 CTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 373807 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || ||||||||||| || || Sbjct 373808 CTTGCCAGTCAGGGTTTTCACAAAGATCTG 373837 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || |||||| |||| ||||| | || || | || |||||| |||||||| Sbjct 373711 ATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAACATCCAGAAA 373652 Query 200998 GAGTCTACTCTTCACCTTGT 201017 |||||||||||||||||||| Sbjct 373651 GAGTCTACTCTTCACCTTGT 373632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177736044018696