Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq459 143 3e-29 seq1065 136 4e-27 >seq459 Length=1799516 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || | || || || ||||||||| | || || ||| ||| Sbjct 773815 AATGCAGATCTTTGTCAAGACCTTGACAGGTAAGACCATCACCTTGGAAGTTGAGCCCAG 773874 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||| ||||| ||||| ||||||| Sbjct 773875 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 773934 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 773935 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAA 773994 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| ||||||||||| | || |||||| Sbjct 773995 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTCAGGGGCGGC 774043 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 774044 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCCAGT 774103 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 774104 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 774163 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| ||||| || || | ||||||||| |||||||||| Sbjct 774164 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAAC 774223 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||| | |||||||| | || ||||| Sbjct 774224 ATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCGCCTCAGGGGCGG 774270 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || | || ||||| ||||||||| | || |||||| ||| Sbjct 774271 AATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 774330 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 774331 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 774390 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 774391 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAA 774450 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || | || |||||| | |||||||| |||| || || Sbjct 774451 CATCCAAAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 774498 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||| ||||| ||||| ||||||| ||| |||| |||| ||| ||||| ||| Sbjct 773675 ATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGAGGCTGATTTTCGCTGGCAAGCAG 773734 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 || || || | ||||||||| ||||||||||||||| |||||| | || || ||| | Sbjct 773735 CTTGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTCCATCTC 773794 Query 38451 GTGCTGCGTTTGAGAGGCGG 38470 |||||||| | || ||||| Sbjct 773795 GTGCTGCGCCTCAGGGGCGG 773814 >seq1065 Length=1128224 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| |||| || ||| ||| Sbjct 373612 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 373553 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||||| ||||||||||| ||||| | ||||| Sbjct 373552 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373493 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 373492 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373433 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCG 38473 ||||| ||||| | || || || | |||||||| |||| || ||||| Sbjct 373432 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGCCG 373383 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| |||| || ||| ||| Sbjct 373840 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 373781 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||||| ||||||||||| ||||| | ||||| Sbjct 373780 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373721 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 373720 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373661 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || || || | |||||||| |||||||| ||| Sbjct 373660 ATCCAGAAAGAGTCTACTCTTCACCTTGTGCTGCGCTTGAGAGGTGGC 373613 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| |||| || ||| ||| Sbjct 374068 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 374009 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||||| ||||||||||| ||||| | ||||| Sbjct 374008 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373949 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 373948 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373889 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || | || ||||| ||||||| ||| Sbjct 373888 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGAGGTGGC 373841 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| |||||||| |||| || ||| || Sbjct 374299 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCC 374240 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| ||||| || || |||||| | ||| Sbjct 374239 AGTGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 374180 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| ||||| || |||| ||||||||| |||||| Sbjct 374179 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCTGACTAC 374120 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| |||||| | || || || | || ||||| ||||||| ||| Sbjct 374119 AACATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGAGGTGGC 374069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499682080465920