Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1650 100 1e-15 seq1229 84.2 9e-11 >seq1650 Length=685912 Score = 100 bits (110), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || | ||||| || || |||||||| || | || || || || || Sbjct 566792 GTTACTAATGCTGTGGTCACTGTACCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACA 566851 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | || || || |||||||| ||||| || |||||| Sbjct 566852 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCGACAGCA 566911 Query 451433 GCTGCTCTAGCATATGGACT 451452 |||||| |||| ||||| || Sbjct 566912 GCTGCTATAGCCTATGGTCT 566931 >seq1229 Length=1352947 Score = 84.2 bits (92), Expect = 9e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 451167 TTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTG 451226 |||||| | | || || | | |||| |||||| |||||||||| || | |||| Sbjct 491165 TTTCTTCTCAGGTTGTTGAAAAGAAAGCCAAGCCCCATATTCAAGTTGATGTTGGCGGTG 491224 Query 451227 AA---ACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAG 451283 | || ||||| ||||||||||||||||||||| ||||||| || || || ||||| | Sbjct 491225 GACAGACAAAAACATTTGCTCCTGAAGAAATTTCAGCTATGGTCCTGACAAAGATGAAGG 491284 Query 451284 AAACAGCAGA 451293 |||| || || Sbjct 491285 AAACCGCGGA 491294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973731563244704