Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1015 91.5 1e-12 seq76603 89.7 4e-12 seq1650 89.7 4e-12 seq1332 87.8 1e-11 >seq1015 Length=803807 Score = 91.5 bits (100), Expect = 1e-12 Identities = 317/486 (65%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | || || || |||||||||||||| | || || || || || || || |||||| Sbjct 220005 GCACTGACGTTCAGGATACCATTGGCATCTATGTCGAAAGTAACCTCGATCTGGGGGACC 220064 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| ||| || || ||| | ||||| || || || || Sbjct 220065 CCGCGGGGTGCTGGGGGGATGCCTGTCAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTG 220124 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436 || | | ||||||||| | | |||| || | ||| | | || || ||||| | Sbjct 220125 GTCATGGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGAGT 220182 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 220183 AGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGGGCG 220241 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | || || ||||| || | || || || || || |||||||| | |||| Sbjct 220242 GTCATCACCCCGCCGGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAGCAGGAGC 220301 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || || | | || | || ||||| ||||| | || ||||| Sbjct 220302 AGATCCTGCACGTTCTCGGACTTGTCTCCCATGAGGATAGCCGCTTGCACGGCCGCACCG 220361 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || |||||||| ||||||||||| | | | || || | ||| |||||||| || | Sbjct 220362 TAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 220421 Query 517676 GAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || |||| ||| | ||| || ||||| | || |||||||| | || || || || Sbjct 220422 TGTAGTAGTT-TCTGGATCTTGGGGATACGGGTGGAACCTCCAACCAGCACGATCTCCTG 220480 Query 517735 CACCTG 517740 | ||| Sbjct 220481 GATCTG 220486 >seq76603 Length=1081 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518531 GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590 || ||||||||||| |||||| |||||| || || ||||| ||||||| ||||| Sbjct 226 GTGTTGGTTGGATTCATTGCAACTTGATTCTTTGCAGCATCGCCAATCAACCTCTCTGTG 167 Query 518591 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 518650 ||||| || | ||||| || || || || || || || ||||| ||||| || || Sbjct 166 TCTGTGAAGGCGACATAGCTCGGCGTGGTCCGGTTCCCCTGGTCATTGGCAATGATCTCC 107 Query 518651 ACTTTACCATTTTGCCATACACCTACACA 518679 || || |||| ||| | ||||| ||||| Sbjct 106 ACCTTCCCATGTTGGAACACACCAACACA 78 >seq1650 Length=685912 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518531 GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590 || ||||||||||| |||||| |||||| || || ||||| ||||||| ||||| Sbjct 566004 GTGTTGGTTGGATTCATTGCAACTTGATTCTTTGCAGCATCGCCAATCAACCTCTCTGTG 565945 Query 518591 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 518650 ||||| || | ||||| || || || || || || || ||||| ||||| || || Sbjct 565944 TCTGTGAAGGCGACATAGCTCGGCGTGGTCCGGTTCCCCTGGTCATTGGCAATGATCTCC 565885 Query 518651 ACTTTACCATTTTGCCATACACCTACACA 518679 || || |||| ||| | ||||| ||||| Sbjct 565884 ACCTTCCCATGTTGGAACACACCAACACA 565856 >seq1332 Length=1796038 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | || || || ||||| || |||||| | ||| | | | ||||| Sbjct 1489038 TGTTGTGGCTACAGTGGCGTTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1489097 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 1489098 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1489157 Query 367113 TGATGG 367118 ||||| Sbjct 1489158 CGATGG 1489163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3776927566900528