Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1015 297 2e-75 >seq1015 Length=803807 Score = 297 bits (328), Expect = 2e-75 Identities = 1034/1599 (65%), Gaps = 36/1599 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| |||||||| || || Sbjct 219884 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTTGCT 219943 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || || || || ||||| | ||||||| | ||| ||| | Sbjct 219944 GAGGCGACCCTTGTCGTTGGTGATGGTTATCTTGTTCTCCTTACCCGTGCTCTTGTCTAC 220003 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||||| || |||| |||||||| ||||| | ||||| | || | || || || Sbjct 220004 CGCACTGACGTTCAGGATACCATTGGCATCTATGTCGAAAGTAACCTCGATCTGGGGG-- 220061 Query 6748 ACCCCTCGG--TGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCC 6805 ||||| ||| ||| | || || || || | |||||| | || || || |||| ||| Sbjct 220062 ACCCCGCGGGGTGCTGGGGGGATGCCTGTCAGATCAAACTTGCCCAGCAAGTTGTTGTCC 220121 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTT 6863 | | | | | ||||| || || || | | | ||| || || || ||| Sbjct 220122 TTGGTCATGGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGCTC--TGGTTGTCTG 220179 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | |||| | || || || | ||||| || || || | | || | | Sbjct 220180 AGTAGGTGGTGAAGGTCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGGG 220239 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 |||||| | || || || |||| || || ||||| || || || |||| || | Sbjct 220240 CGGTCATCACCCCGCCGGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAGCAGGA 220299 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 ||| || || || ||| | || ||| | | ||| || ||||| || | ||| | Sbjct 220300 GCAGATCCTGCACGTTCTCGGACTTGTCTCCCATGAGGATAGCCGCTTGCACGGCCGCAC 220359 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || |||||||| || || || | || || || ||||| || || || | | Sbjct 220360 CGTAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGT 220419 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 || || | || || || || ||||| || || || || || |||| ||||| || | Sbjct 220420 CCTGTAGTAGTTTCTGGATCTTGGGGATACGGGTGGAACCTCCAACCAGCACGATCTCCT 220479 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | | || || | ||| | || || || | ||||| ||||| |||| Sbjct 220480 GGATCTGGCCCTTGTCTAGCTTGGCATCACGCAGGGCCTTTTCTACAGGCTCCAGGGTGC 220539 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 |||||| | ||| | || |||||||| || ||||| |||||||| || ||||| | Sbjct 220540 CACGGAAGAGGTCGGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAAGTGTAGAAGT 220599 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACG 7340 ||| ||| ||||| | || || || |||||| | | ||| ||| ||||| | | Sbjct 220600 CAATGCCCTCGTACAGGGAGTCGATCTCAATGCTAGCTTG---CGTGGAAGAGCTGAGAG 220656 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 | ||||| || | |||||| ||||| || | || | | |||||| || || | || Sbjct 220657 TGCGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACCGCACGCTTATTGCCAGCAA 220716 Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 | || ||| || ||||| || || ||||| ||||| | | | || | Sbjct 220717 TGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAA 220776 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || || || |||| ||| || ||||| || || | || || |||||||| || | | Sbjct 220777 AGTCCTCCCCCCCCAGGTGGGTGTCCCCAGCTGTGGACTTCACCTCAAAGATGCCATCCT 220836 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 ||||| | | | ||||||||||| || || || |||| |||||| ||||| || ||| Sbjct 220837 CAATGGTAAGGATGGAAACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTCT 220896 Query 7581 TATCGTC-GTCTTTG-----TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | ||| | | | | ||||| || | ||||| || || || || || || || | Sbjct 220897 TCTCGCCAGCCCGAGTACCTTTCTTGTCCAAGCCGTAGGCTATCGCAGCTGCTGTGGGCT 220956 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || |||||||| | ||||||||| | || || | |||||||| || || || | Sbjct 220957 CGTTGATAATACGCATCACGTTCAGGCCGGTGATGGTGCCAGCATCTTTGGTGGCCTGGC 221016 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || || || ||||| || || ||||| | ||| |||| | || || || | Sbjct 221017 GCTGGGAGTCATTGAAGTAAGCAGGCACCGTGATGACAGCGTTCTGCACCTTGCGCCCCA 221076 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 |||| | || || || || ||||| |||||||| ||||| || ||||| || | | Sbjct 221077 GATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGCACCATGGAGCTGATCTCCTC-GGGG 221135 Query 7815 CAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | | || ||| | || || || | || || | | | |||| || || |||| Sbjct 221136 AAGAAGGTCTTCATCTCGCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCC 221189 Query 7874 GGGATAACC---TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | | ||| | | ||| | ||||| || || || |||| || Sbjct 221190 TCGTTCACCACGCGGAAGGGCCAGTGCTTCATGTCCGACTGCACGGTGGGGTCATCGTAC 221249 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||||| || ||||| |||||||| | ||||| |||||||||| || ||| Sbjct 221250 TTGCGGCCGATGAGGCGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATCGCCACCTGG 221309 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || ||||| ||||| || || || || || || || || ||||| | |||| Sbjct 221310 TTCTTGGCGGCGTCGCCGATGAGCCGCTCGGTA---TCGGTGAAGGCCACGTA-GCTGGG 221365 Query 8051 -GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 || || || || || |||||||| || || || || || | | | || ||||||| Sbjct 221366 CGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACGCC 221425 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||||||| ||||| || || | || || ||||| || Sbjct 221426 CACGCACGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 221464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634509671209920