Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq459 145 2e-29 seq1065 136 9e-27 >seq459 Length=1799516 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || | ||| ||||||||||| || || || ||||| |||| || || Sbjct 774036 CTGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 773977 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| |||||||| || ||||| || || | || ||||| ||||||||||| Sbjct 773976 CGCCCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCC 773917 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || |||||| |||||||||||||| ||| || ||||| Sbjct 773916 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCC 773860 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||| | ||||| |||||||| || || || || | |||||| Sbjct 773859 AAGGTGATGGTCTTACCTGTCAAGGTCTTGACAAAGATCTGCATT 773815 Score = 141 bits (156), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||||||||| || ||||| |||| || || | ||||||||| Sbjct 774480 ACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCA 774421 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || |||||||| ||||||||||| ||||| || Sbjct 774420 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 774361 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || || || | ||| | ||| Sbjct 774360 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCCAAGGTGATGGTC 774304 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| || || || || | |||||| Sbjct 774303 TTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 774271 Score = 134 bits (148), Expect = 3e-26 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || || || |||||||| || || || || ||||| |||| || || Sbjct 774264 CTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 774205 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| |||||||| || || ||||| || | || |||||||| |||||||| Sbjct 774204 CGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCC 774145 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || |||||| |||||||||||||| ||| || ||||| Sbjct 774144 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCC 774088 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| | ||||| || |||| || || ||||| | ||||| Sbjct 774087 AAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 774044 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || || || |||||||| || || || || ||||| |||| || || Sbjct 773808 CTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 773749 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||||||| |||||||| || ||||| || || | || ||||| ||||||||||| Sbjct 773748 CGCCCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCC 773689 Query 195040 TCTTTGTCTTGAAT 195053 || ||||| || || Sbjct 773688 TCCTTGTCCTGGAT 773675 >seq1065 Length=1128224 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| |||||||| || || ||||| || | || || | ||||| || Sbjct 373632 ACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCC 373691 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || ||||| ||||||||||| |||||||| || Sbjct 373692 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGG 373751 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||| ||||| ||| || || || ||||| | ||| Sbjct 373752 ATTTTGGCCTTCACATTCTCAATAGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 373808 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||||| || || | ||||| Sbjct 373809 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 373840 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | ||||| || Sbjct 373404 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCC 373463 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || ||||| ||||||||||| |||||||| || Sbjct 373464 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGG 373523 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || |||||||| ||||| ||| || || || ||||| | ||| Sbjct 373524 ATTTTGGCCTTCACATTCTCAATAGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 373580 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||||| || || | ||||| Sbjct 373581 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 373612 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || |||||||| |||||||| || || || || ||||| || | || || Sbjct 373847 TCTCAGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 373906 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || |||||||| | | || ||||| ||||||||||| Sbjct 373907 GCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCC 373966 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || ||||| ||| || |||||||| ||||| ||| || || || Sbjct 373967 CTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTC---ACTGGGCTCAACCTC 374023 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| ||||| || || | ||||| Sbjct 374024 GAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 374068 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || |||||||| |||||||| || || || || ||||| || | || || Sbjct 374075 TCTCAGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 374134 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| ||||| ||||| || | || |||||||| |||||||| Sbjct 374135 GCGCCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 374194 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || ||| || ||||| ||||| || ||| || || || Sbjct 374195 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATC---ACTGGGCTCAACCTC 374251 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||| || || || || | ||||| Sbjct 374252 GAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 374296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108365874792296