Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq459 105 4e-18 seq1065 102 5e-17 >seq459 Length=1799516 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| || ||||| || || ||||| Sbjct 774235 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAA 774176 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | ||||||||||| ||||| ||||| | Sbjct 774175 GATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--A 774118 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || || |||||| Sbjct 774117 TTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 774058 Query 34968 ACAAAGATCTGCAT 34981 || || |||||||| Sbjct 774057 ACGAAAATCTGCAT 774044 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||||||| | ||| || ||||| ||||| ||||| || Sbjct 774042 CCGCCCCTGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 773983 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || || || || || || | |||||||| | || Sbjct 773982 AGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGA 773923 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || || | |||| || ||||| Sbjct 773922 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAA 773865 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | ||||| |||||||||||||| Sbjct 773864 CTTCCAAGGTGATGGTCTTACCTGTCAAGGTCTTGACAAAGATCTGCAT 773816 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || ||||| ||||| || ||| | || |||| || ||||| || || ||||| Sbjct 774462 TCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAG 774403 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | || |||||||| ||||| ||||| || Sbjct 774402 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT 774345 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || | ||||| | Sbjct 774344 TCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGA 774285 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 774284 CAAAGATCTGCAT 774272 >seq1065 Length=1128224 Score = 102 bits (112), Expect = 5e-17 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || | || || ||||| || || ||||| Sbjct 374105 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCCTGCAAA 374164 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||||||| | || | || |||||||| ||||| || || | Sbjct 374165 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 374222 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| |||| || ||||| || || || || |||||| Sbjct 374223 TTCTCGATGGTATCACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 374282 Query 34968 ACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 374283 ACAAAGATCTGCATGTT 374299 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | || || | ||||| || |||||||| ||||| ||||| || Sbjct 373614 CCACCTCTCAAGCGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 373673 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || || || || | | |||||||| | || Sbjct 373674 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGA 373733 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| ||||| || || || || || || || | |||| || ||||| Sbjct 373734 ATGCCCTCTTTGTCCTGGATTTTGGCCTTCAC--ATTCTCAATAGTGTCACTGGGCTCAA 373791 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || || ||||||||||||||||| Sbjct 373792 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 373840 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || || | ||| | ||| || ||||| ||||| ||||| || Sbjct 373386 CCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 373445 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || || || || | | |||||||| | || Sbjct 373446 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGA 373505 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| ||||| || || || || || || || | |||| || ||||| Sbjct 373506 ATGCCCTCTTTGTCCTGGATTTTGGCCTTCAC--ATTCTCAATAGTGTCACTGGGCTCAA 373563 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || || ||||||||||||||||| Sbjct 373564 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 373612 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 373877 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAA 373936 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | ||||| ||||| || || || || | Sbjct 373937 GATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTCAC--A 373994 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| |||| ||| ||||| || || || || || ||| Sbjct 373995 TTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTC 374054 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 374055 ACAAAGATCTGCAT 374068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324323064425664