Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1650 102 7e-16 >seq1650 Length=685912 Score = 102 bits (112), Expect = 7e-16 Identities = 123/166 (74%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 550372 TGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATG 550430 ||||||| || | ||| ||||| |||| || | ||||||||||| ||||| || | Sbjct 566772 TGCTTTTTTTTCCCCAGACTGTTACTAATGCTGTGGTCACTGTACCAGCCTATTTCAACG 566831 Query 550431 ACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTA 550490 |||| || || || || || |||||||||||| ||||| || || || || || || | Sbjct 566832 ACTCCCAGCGCCAGGCCACAAAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAA 566891 Query 550491 TTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||||| || || || ||||| | || ||||| || || || Sbjct 566892 TTATCAATGAGCCGACAGCAGCTGCTATAGCCTATGGTCTGGACAA 566937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025145200579120