Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq45726 116 7e-21 seq998 84.2 4e-11 >seq45726 Length=169 Score = 116 bits (128), Expect = 7e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||| |||||| ||||||||||| |||| |||||| ||||| || | | |||||| Sbjct 151 CTTGAGGCTCTTCACCTTCTCCTCCAGGCGCGAGATGCGCTCCAGCTTCCTCTTGCGGCA 92 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||||| || | ||| || |||||||||||||| ||||| Sbjct 91 CTTGGAGGCGGCGATGCGGTTCCTCAGCCGCTTCCGCTCCGCCTTGATGCGCTCCTGCGT 32 Query 241609 CTCCATGTCGATCGGAGAC 241627 ||||||||||| || ||| Sbjct 31 GTCCATGTCGATGGGCGAC 13 >seq998 Length=117795 Score = 84.2 bits (92), Expect = 4e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| |||||| || || || | ||| || || ||| ||||| |||| | | | Sbjct 100424 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 100483 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || |||| ||| || | || ||||| |||||||||||| ||||| ||| Sbjct 100484 TCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGATGCCAAGGC 100543 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 100544 TCCAGGTAGATGGCAAAAGCTCCAGGTCTCT 100574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930618873169920