Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq104 93.3 8e-14 seq998 89.7 1e-12 >seq104 Length=2005322 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||||||||| || || |||||||| ||| || |||||||| || ||||| ||| Sbjct 1841231 GTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTCTCGGGCTCGTTTGCTGCTATCTTTTGG 1841290 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGA 26003 || ||| ||| ||| ||||| || ||| ||||| ||||| || ||||| ||||| || Sbjct 1841291 CTGAAGAAGAGGGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAACTCATTAGCAGAGA 1841349 Query 26004 CGAGG 26008 |||| Sbjct 1841350 TGAGG 1841354 >seq998 Length=117795 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 |||||| || ||| ||||||||| | || |||||||| || |||||||| |||||||| Sbjct 99106 CACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGT 99165 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 ||||| | | ||||| ||| || ||| || ||||||||| ||||| | || Sbjct 99166 CCCCAAATTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGT 99225 Query 221851 GCCAGTCTC 221859 ||||||||| Sbjct 99226 GCCAGTCTC 99234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927933510366720