Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq537 161 1e-34 seq1925 118 1e-21 >seq537 Length=958612 Score = 161 bits (178), Expect = 1e-34 Identities = 244/344 (71%), Gaps = 5/344 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||| | || ||| |||| ||||| || || || |||||| || || || | Sbjct 105533 TGTGTCGTAAATATTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTATCAAACT 105592 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | || ||||| | || ||||| |||||||| Sbjct 105593 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCATTTCAGATCTCCTACCCCGAACA 105649 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || ||| |||| || ||||| | || ||||| | ||| | Sbjct 105650 CACAGACAGACCGAACATGAACTCCGCTGCATGGTGGGTAAGGTGCACCTTTAGACACAT 105709 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||||||||| | || | ||| ||||| |||| Sbjct 105710 CTCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATATCGGAAACATCGT 105769 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| |||||||| || | || || | ||| | || |||||| Sbjct 105770 ACTTGT-CACTAGAAGAAACAGCACCGGGGACTTCAGGGATTCTCTGAATCGTTGCCCAC 105828 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAA 160387 |||| ||| || |||||||| || || || | ||| || || || Sbjct 105829 AGGTATTCATCAGGGCTGTAAGTATCTTTTGCCCACTCAATAAA 105872 Score = 120 bits (132), Expect = 4e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 |||||| |||||| ||||||||||| | |||||| ||||| || || || ||||||| | Sbjct 106255 TCATGCCATTAATTTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCTAGCT 106314 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || || Sbjct 106315 GGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCCCTTCACAG-CAGTAAAAAAG 106373 Query 160828 TCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 || | | ||||| ||| || || | ||| || | |||||||| || ||||| | Sbjct 106374 GATTCTGGAGACTTTCTGTCTACATGAATGCAGTAAAAATTCTGAGGAGCATAGATAGAT 106433 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | || || | |||||| || || || | | ||| || ||||| || || ||| Sbjct 106434 CTTAGAAGTCTATCAAGCATCTCGATTTTGTGGTAAACCACTATTGAGTAAGCAATTGGA 106493 Query 160947 AACTC 160951 || || Sbjct 106494 AATTC 106498 >seq1925 Length=2542117 Score = 118 bits (130), Expect = 1e-21 Identities = 191/273 (70%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 160699 GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGT 160758 |||||||| |||||| || | || ||||||| ||| |||||| || || || || Sbjct 2311243 GCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGCGTGACCAGGAGGCATAGACCACCC 2311302 Query 160759 TCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCA 160818 |||| || ||||||||||||||||| ||| || | |||| || ||| ||| Sbjct 2311303 TCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCGGCGATGGCCCTCACGGCCT 2311362 Query 160819 GAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGC 160876 ||| | || | ||| | ||| ||||| | ||| || | ||| || ||||| Sbjct 2311363 CCTGGAAGGCGGCTGGG--GACTTGCTGTCTACGTGGATGCAGTAGACGTTTTGTGGCGC 2311420 Query 160877 GTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTA 160936 |||||||| || || | || |||||||||||| || || | ||||| || || ||||| Sbjct 2311421 GTAGATGGACCGCAGGAGCCGCTCGAACATCTCGATTTTGTTGTGGATGACTATGGAGTA 2311480 Query 160937 GGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 ||| || || ||| ||| |||||| |||||| Sbjct 2311481 GGCAATGGGGAACGCGGCCTCCTCCTCACTCAG 2311513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576652890242880