Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq315 89.7 9e-13 >seq315 Length=1270250 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 39167 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 39226 ||| ||| |||||| | ||| |||||||||||||| || || |||||||| ||||| || Sbjct 390536 TTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCTTCAGCCAAAAAATTGAAGC 390477 Query 39227 AAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTA 39273 |||| | ||||||||| || || |||||| ||||| |||| || Sbjct 390476 AAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAGCTACTA 390430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904247971070400