Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq90 170 2e-36 seq204 167 3e-35 seq1983 152 6e-31 seq2433 95.1 1e-13 >seq90 Length=4921412 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||| ||||||||||| |||| | || Sbjct 2180374 GCTTGGCCAGCTCCCCCGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 2180433 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 2180434 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 2180493 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2180494 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2180553 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 2180554 GCACCTGCTTCAGCACCTTGTA 2180575 >seq204 Length=1392888 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 23994 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 24053 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 24054 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 24113 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 24114 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 24173 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 24174 GCACCTGCTTCAGCACCTTGTA 24195 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 42066 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 42007 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 42006 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 41947 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 41946 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 41887 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 41886 GCACCTGCTTCAGCACCTTGTA 41865 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 59809 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 59750 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 59749 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGA 59690 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 59689 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 59630 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 59629 GCACCTGCTTCAGCACCTTGTA 59608 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 115620 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 115561 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 115560 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 115501 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 115500 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 115441 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 115440 GCACCTGCTTCAGCACCTTGTA 115419 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 133167 GCTTGGCCAGCTCGCCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 133226 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 133227 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 133286 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 133287 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 133346 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 133347 GCACCTGCTTCAGCACCTTGTA 133368 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 53368 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 53427 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 53428 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGA 53487 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | || ||||||||| |||||||| Sbjct 53488 TGTCGTTGACGAAGGAGTTCATGATACTCATGGCTTTAGATGAGATGCCCGTGTCGGGGT 53547 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 53548 GCACCTGCTTCAGCACCTTGTA 53569 Score = 132 bits (146), Expect = 6e-25 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1254377 GGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCC 1254436 ||| | ||||||||| |||| | ||| || ||||||||| |||||||||| || Sbjct 106700 GGCAGCCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGA 106641 Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 |||||| ||||||| |||| ||||||||||| || |||||||||| ||| | Sbjct 106640 CGCCTCGCCAGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGC 106581 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||||||| |||||||||||||||||| ||||||||||| Sbjct 106580 CTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 106533 >seq1983 Length=27217 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| ||||| || ||||||||||| || | | || Sbjct 18627 GCTTGGCCAGCTCGCCGGGCAGCAACAGCCGCACAGCAGTCTGGATCTCCCGGGAGGTGA 18686 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 18687 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGCGAAGCCTCGCCCGCGATGCGCTCGAAGA 18746 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| | ||| | |||| ||||||||| ||| |||| Sbjct 18747 TGTCGTTGACGAAGGAATTCATGATCCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 18806 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 18807 GCACCTGCTTCAGCACCTTGTA 18828 >seq2433 Length=191961 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | || ||||| || ||||| | |||||| || || Sbjct 134493 GCTTGGCCAGCTCGCCAGGCAGCAGGAGCCGCACAGCCGTCTGCACCTCGCGGCTGGTGA 134434 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| | ||| | || ||||| || |||||| | | | ||| |||| | Sbjct 134433 TGGTGGAGCGGTGGTTGTACTGGGCCAGGTGGGAGGCCTCTGAAGCCAGGCGCTCGAAGA 134374 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || |||||||| |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 134373 TATCATTGACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 134314 Query 1254523 GCACCTG 1254529 ||||||| Sbjct 134313 GCACCTG 134307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100698107160696