Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1065 114 1e-20 seq459 104 2e-17 seq998 91.5 1e-13 >seq1065 Length=1128224 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || ||||| || || ||| Sbjct 373612 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 373553 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| |||||||| || || ||||| || || Sbjct 373552 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373493 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || || |||||||||||| | | | |||| || || ||| Sbjct 373492 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373433 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| | ||| |||| || | || ||| Sbjct 373432 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 373385 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || ||||| || || ||| Sbjct 373840 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 373781 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| |||||||| || || ||||| || || Sbjct 373780 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373721 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || || |||||||||||| | | | |||| || || ||| Sbjct 373720 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373661 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || ||| | ||| |||| ||| | || ||| Sbjct 373660 ATCCAGAAAGAGTCTACTCTTCACCTTGTGCTGCGCTTGAGAGGTGGC 373613 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || ||||| || || ||| Sbjct 374068 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 374009 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| |||||||| || || ||||| || || Sbjct 374008 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373949 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || || |||||||||||| | | | |||| || || ||| Sbjct 373948 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373889 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | || |||| || | || ||| Sbjct 373888 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGAGGTGGC 373841 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 374296 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 374237 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| ||||| || || || || || Sbjct 374236 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 374177 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||| || || | | | | |||| || || ||| Sbjct 374176 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCTGACTACAAC 374117 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | || |||| || | || ||| Sbjct 374116 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGAGGTGGC 374069 >seq459 Length=1799516 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || ||||| || || || | ||||| || ||| Sbjct 773816 ATGCAGATCTTTGTCAAGACCTTGACAGGTAAGACCATCACCTTGGAAGTTGAGCCCAGT 773875 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || |||||||| || Sbjct 773876 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 773935 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || || || || ||||| || ||| | | | | |||| || || ||| Sbjct 773936 CAGAGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAAC 773995 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||||||||| |||| Sbjct 773996 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCG 774030 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || | || || || ||| Sbjct 774272 ATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTCGAGCCCAGT 774331 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 774332 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 774391 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||| || ||| | | | | |||| || || ||| Sbjct 774392 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAAC 774451 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || ||||| || || || || || | ||| |||| Sbjct 774452 ATCCAAAAAGAGTCAACCCTGCATCTCGTGCTGCG 774486 >seq998 Length=117795 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || || ||||| | ||||| ||| || || ||||| || || ||||| || |||||| Sbjct 99125 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAATTCTGCTGATTG 99184 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || || ||||| |||| || ||||| ||||| || ||||||||||| || Sbjct 99185 CTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTGCCAGTCTC 99234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449456205464640