Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq90 219 7e-51 seq204 214 3e-49 seq1983 197 2e-44 seq2433 154 2e-31 seq104 95.1 2e-13 >seq90 Length=4921412 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 2180335 TGTACTTGGTGACAGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCCCCCGGCA 2180394 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 2180395 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 2180454 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 2180455 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 2180514 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 2180515 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 2180574 Query 1485710 AAAC 1485713 | || Sbjct 2180575 ACAC 2180578 >seq204 Length=1392888 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 23955 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 24014 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 24015 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 24074 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 24075 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 24134 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 24135 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 24194 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 24195 ACACGTAGATCGAGTA 24210 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 42105 TGTACTTGGTGACTGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 42046 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 42045 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 41986 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 41985 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 41926 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 41925 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 41866 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 41865 ACACGTAGATCGAGTA 41850 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 59848 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 59789 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 59788 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 59729 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 59728 GCGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 59669 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 59668 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 59609 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 59608 ACACGTAGATCGAGTA 59593 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 115659 TGTACTTGGTGACTGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 115600 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 115599 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 115540 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 115539 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 115480 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 115479 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 115420 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 115419 ACACGTAGATCGAGTA 115404 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 53329 TGTACTTGGTGACTGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 53388 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 53389 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 53448 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 53449 GCGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 53508 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 53509 TGATACTCATGGCTTTAGATGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 53568 Query 1485710 AAAC 1485713 | || Sbjct 53569 ACAC 53572 Score = 210 bits (232), Expect = 3e-48 Identities = 200/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| ||||| ||| Sbjct 133128 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCAGGCA 133187 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 133188 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 133247 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 133248 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 133307 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 133308 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 133367 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 133368 ACACGTAGATCGAGTA 133383 Score = 127 bits (140), Expect = 3e-23 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 1485543 GGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCC 1485602 ||| | ||||||||| || | | ||| || ||||||||| | |||||||||| Sbjct 106700 GGCAGCCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGA 106641 Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662 |||||| ||||||| |||| ||||||||||| || ||||||||||| ||| | Sbjct 106640 CGCCTCGCCAGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGC 106581 Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGA 1485722 ||| ||||||||| |||||||||||||||||| ||||||||||| || || ||| Sbjct 106580 CTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTAGATCGA 106521 Query 1485723 GTA 1485725 ||| Sbjct 106520 GTA 106518 >seq1983 Length=27217 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || || || |||||| ||||||| |||||| ||| Sbjct 18588 TGTACTTGGTGACTGCCTTGGTGCCTTCGGAAACAGCGTGCTTGGCCAGCTCGCCGGGCA 18647 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| |||| | ||| ||| ||||||||| Sbjct 18648 GCAACAGCCGCACAGCAGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 18707 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || || |||| Sbjct 18708 GCGCCAGGCGCGAAGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAATTCA 18767 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 18768 TGATCCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGCACCTGCTTCAGCACCTTGT 18827 Query 1485710 AAAC 1485713 | || Sbjct 18828 ACAC 18831 >seq2433 Length=191961 Score = 154 bits (170), Expect = 2e-31 Identities = 172/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 134532 TGTACTTGGTGACAGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCGCCAGGCA 134473 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||| | ||||||| || ||| ||| ||| | ||| || | Sbjct 134472 GCAGGAGCCGCACAGCCGTCTGCACCTCGCGGCTGGTGATGGTGGAGCGGTGGTT-GTAC 134414 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||| || |||||| | | | ||| |||| || || |||||||| |||||| Sbjct 134413 TGGGCCAGGTGGGAGGCCTCTGAAGCCAGGCGCTCGAAGATATCATTGACAAAGGAGTTC 134354 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||| | ||| ||||||||| ||| ||||||||||| Sbjct 134353 ATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGCACCTG 134307 >seq104 Length=2005322 Score = 95.1 bits (104), Expect = 2e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATA--TCCGTT 796360 |||||||| || |||||||||||||||| ||||| ||||||||| | ||||| |||| Sbjct 1836525 ACCTCCTCCGCCGTCCAAAAGGAGGCCTGGGCCTGTTTGTACATTTTCCATATGTCCG-- 1836468 Query 796361 GGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||| |||||||||| | ||||||||| |||||| | | || || ||||| Sbjct 1836467 GGTACTGGATGGGGAAGATGACAAAGCGACGGGGGTTTTTTCTGAGGAGAGGCTC 1836413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7907897273456232