Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1332 93.3 3e-13 seq1015 91.5 1e-12 >seq1332 Length=1796038 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | || || || ||||| || |||||| | ||| | | | ||||| Sbjct 1489038 TGTTGTGGCTACAGTGGCGTTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1489097 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 1489098 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 1489157 Query 131296 TGATGG 131301 ||||| Sbjct 1489158 CGATGG 1489163 >seq1015 Length=803807 Score = 91.5 bits (100), Expect = 1e-12 Identities = 317/486 (65%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || || || |||||||||||||| | || || || || || || || |||||| Sbjct 220005 GCACTGACGTTCAGGATACCATTGGCATCTATGTCGAAAGTAACCTCGATCTGGGGGACC 220064 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| ||| || || ||| | ||||| || || || || Sbjct 220065 CCGCGGGGTGCTGGGGGGATGCCTGTCAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTG 220124 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603 || | | ||||||||| | | |||| || | ||| | | || || ||||| | Sbjct 220125 GTCATGGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGAGT 220182 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 220183 AGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGGGCG 220241 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | || || ||||| || | || || || || || |||||||| | |||| Sbjct 220242 GTCATCACCCCGCCGGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAGCAGGAGC 220301 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || || | | || | || ||||| ||||| | || ||||| Sbjct 220302 AGATCCTGCACGTTCTCGGACTTGTCTCCCATGAGGATAGCCGCTTGCACGGCCGCACCG 220361 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || |||||||| ||||||||||| | | | || || | ||| |||||||| || | Sbjct 220362 TAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 220421 Query 281843 GAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || |||| ||| | ||| || ||||| | || |||||||| | || || || || Sbjct 220422 TGTAGTAGTT-TCTGGATCTTGGGGATACGGGTGGAACCTCCAACCAGCACGATCTCCTG 220480 Query 281902 CACCTG 281907 | ||| Sbjct 220481 GATCTG 220486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736776970890288