Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1354 132 9e-26 >seq1354 Length=560939 Score = 132 bits (146), Expect = 9e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | || ||||| || |||||||| |||||||| || ||||| Sbjct 35275 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTCTTCATC 35216 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| || |||| || || || || ||||| ||||| || ||||| Sbjct 35215 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 35156 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||| | ||| | |||||||| ||| ||||||| || || Sbjct 35155 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 35115 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || |||||| ||||| | ||||| ||||| |||||||| | ||||| || Sbjct 33375 GCTTTTTTTGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTATTACGGA 33316 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || ||| | || || | |||||||| || ||| | || ||| Sbjct 33315 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTGACCATA 33256 Query 58661 ATGCAATTGGTA 58672 ||||||||||| Sbjct 33255 TTGCAATTGGTA 33244 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 32280 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 32221 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| || | || || || || ||||||| Sbjct 32220 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 32161 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | ||||| ||| Sbjct 32160 TAACTTCTACTATCGGACATATAAG 32136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902524863271680