Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq459 140 3e-28 seq1065 138 1e-27 seq998 100 3e-16 >seq459 Length=1799516 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 774012 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCA 773953 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| |||| ||||||||||||||| ||||| |||||||| |||||| |||| Sbjct 773952 GCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 773893 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| || || |||| || Sbjct 773892 ACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTACCTGTCAAGGTC 773833 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 773832 TTGACAAAGATCTGCAT 773816 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 774240 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCA 774181 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || || ||||| |||||||| |||||| |||| Sbjct 774180 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 774121 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 774120 ACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 774061 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||||||||||||| Sbjct 774060 TTCACGAAAATCTGCATG 774043 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| |||||||| || || ||||| ||| || ||| | || || ||||| Sbjct 774475 ATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTG 774416 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| ||||||||| || || |||||||||||||| |||||| Sbjct 774415 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 774356 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 774355 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGT 774296 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 774295 CAAGGTCTTGACAAAGATCTGCAT 774272 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 773784 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCA 773725 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||| |||| |||| ||||||||||||||| ||||| |||||||| ||||| Sbjct 773724 GCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCT 773673 >seq1065 Length=1128224 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| ||| | ||||| |||||||||| Sbjct 373415 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCCTCCAGCTGCTTGC 373473 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || ||||||||| ||||| ||||| || ||||| ||| || || Sbjct 373474 CAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCT 373533 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| | Sbjct 373534 TCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 373593 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || || ||||||||| Sbjct 373594 TTTTCACAAAGATCTGCATG 373613 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || || ||| ||| | ||||| ||||||||||| Sbjct 373644 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCCTCCAGCTGCTTGCC 373702 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| ||||| ||||| || ||||| ||| || ||| Sbjct 373703 AGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTT 373762 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| || Sbjct 373763 CACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 373822 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| || || ||||||||| Sbjct 373823 TTTCACAAAGATCTGCATG 373841 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || ||| ||| | ||||| ||||||||||| Sbjct 373872 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCCTCCAGCTGCTTGCC 373930 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| ||||| ||||| || ||||| ||| || ||| Sbjct 373931 AGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTT 373990 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| || Sbjct 373991 CACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 374050 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| || || ||||||||| Sbjct 374051 TTTCACAAAGATCTGCATG 374069 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 374100 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCCT 374159 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || || |||||||||||||| |||||| ||| Sbjct 374160 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 374219 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | || || ||||||| || |||| |||| ||| ||||| ||||| || Sbjct 374220 ACATTCTCGATGGTATCACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTC 374279 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 374280 TTCACAAAGATCTGCATG 374297 >seq998 Length=117795 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | |||||||||||||||||||| |||| |||| |||||| Sbjct 99125 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAATTCTGCTGATTG 99184 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| | |||||| | |||||||||||||||||| ||| |||||| || Sbjct 99185 CTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTGCCAGTCTC 99234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482946515853120