Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1925 123 3e-23 seq871 122 1e-22 >seq1925 Length=2542117 Score = 123 bits (136), Expect = 3e-23 Identities = 238/346 (69%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || |||||||| ||||| || | ||| ||||||||||||||| || | ||||| Sbjct 2311161 CGAACCATCTCCGCGTTGGTTTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACATAG 2311220 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 |||| ||| | || | | ||| ||||| | ||||| || || ||||| | ||| Sbjct 2311221 CGCCACGGCACG-GGGCTCTGCAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGCG 2311279 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| || || || || || ||||||| | |||| |||||||| ||| ||| || Sbjct 2311280 TGACCAGGAGGCATAGACCACCCTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCA 2311339 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAACATCGGGT-CCGCTTTCCTATCTACGTGTA 162877 | | || || |||||||| ||| ||| | | || || |||||||| | Sbjct 2311340 GGCGGCGATGGCCCTCACGGCCTCCTGGAA-GGCGGCTGGGGACTTGCTGTCTACGTGGA 2311398 Query 162878 CGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCT 162937 |||||| | || || || |||||||||| || ||| | | |||||||||||| || | Sbjct 2311399 TGCAGTAGACGTTTTGTGGCGCGTAGATGGACCGCAGGAGCCGCTCGAACATCTCGATTT 2311458 Query 162938 TATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | | ||| | || || || || || ||||||||| | |||||||| Sbjct 2311459 TGTTGTGGATGACTATGGAGTAGGCAATGGGGAACGCGGCCTCCTC 2311504 >seq871 Length=2444429 Score = 122 bits (134), Expect = 1e-22 Identities = 458/704 (65%), Gaps = 17/704 (2%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | |||||| ||||||| ||| || | |||| Sbjct 576023 GCCAGCTCTCTTGGGGAGAGAAAATCTTCCACGTGTATGAAAGAATCTGATGGAATGTAA 575964 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||| | Sbjct 575963 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGGGCA 575904 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || |||||||| || |||| | || || ||||| | || |||||| Sbjct 575903 TTGTAAAGTTTCTCAGTAATATAATCTTTGTGGATTGAATTTTCAAATGAAAGGTAGAAT 575844 Query 177126 TTACAGGAAGATAGTAG-CGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 ||||| | ||| | ||| || || |||| | ||| | || ||||| | | | Sbjct 575843 TTACAAGTAGAGA-TAGTTGGAATTAAGTTTTTATCATTGACGTAGTCTCCGAAGGCTTG 575785 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || |||| ||| || ||||| ||| || || || || | | Sbjct 575784 CCCATAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCAT 575726 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || ||||| || || || ||||| || || || || ||||| | || || Sbjct 575725 GCTCAGGATTCCAGTTACTTACAACCCAACACACCAAGTT-TTCTTTACTTGGCAC---- 575671 Query 177303 TTCGATA-CTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| ||| ||| | | | | | | | | | | ||||| ||||| |||||||| | Sbjct 575670 TTC-ATATGTAAAGGAACTTGTACCAACCATCATGAAGCCATAAGGCACCTGAATATCTG 575612 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 | || || | || || | || || || ||||||| ||| || | || ||||| | | Sbjct 575611 AATCACGCCGATAAGTCAGGGTCAGGTTAAAAAGGTGTTCAATGCCACTCTTTTGAGGAG 575552 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 ||| | || || || ||||||||||| ||||| || || || | ||| |||| || Sbjct 575551 TATGT--GTTGGAGACTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTG 575494 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| | || |||| || || || ||||| |||| || || || | || Sbjct 575493 CTGAGGTAAATTAGTCAGATCCCAGCTAATGTCCCTGTGATGAATGAGAACTGCGTGGGA 575434 Query 177539 TTTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCT 177598 ||||| ||| | || | ||| | || | || ||| || | ||||| || | | Sbjct 575433 TTTGTTATATAGTGAGCGGTCAATAGTCAGATGGCACCCATGGATGTTGAACATTGTTTG 575374 Query 177599 ACACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642 || | |||||||||||| || || | ||||| ||||| Sbjct 575373 GCAGGATGTTAGATCAAATGTCTGACCAAATGGCCAAACCCAGA 575330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577864500364800