Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1065 125 6e-24 >seq1065 Length=1128224 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 373421 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAA 373480 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||||| || ||| |||||| ||| || ||||| | | Sbjct 373481 GATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATT 373540 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| |||||||| Sbjct 373541 CTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 373600 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 373601 AAAGATCTGCAT 373612 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 373878 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAG 373937 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | ||||| || ||| |||||| ||| || ||||| | | Sbjct 373938 ATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTC 373997 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| ||||||||| Sbjct 373998 TCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACA 374057 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 374058 AAGATCTGCAT 374068 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 373649 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAA 373708 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||||| || ||| |||||| ||| || ||||| | | Sbjct 373709 GATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATT 373768 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| |||||||| Sbjct 373769 CTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 373828 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 373829 AAAGATCTGCAT 373840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450351326399040