Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq37 113 4e-20 seq315 104 2e-17 >seq37 Length=3134438 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||||||||||| | || ||||| || ||| ||||||||| ||| Sbjct 1774469 TGATGGCTTTGCCACCTTGTCATGCTCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 1774410 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 1774409 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 1774350 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || ||||| || || || || Sbjct 1774349 GCTATTCGCTGCTCACATACATGATCGCCCATGTCAC 1774313 >seq315 Length=1270250 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || || ||||| ||||| Sbjct 388292 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATCGCCATGGAAAAC 388351 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| |||||||| || |||||||| || ||||||||||| || Sbjct 388352 ATACATTCAGAAATGTATAGCCTTCTGATTGACACGTACATCAAGGA 388398 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||||| |||||||||||| |||||||| || || ||||| Sbjct 390420 GGAGAACGTGTAGTAGCTTTTGCAGCTGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCT 390479 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | |||||| |||| || ||||| || | || ||||| || || | Sbjct 390480 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCGGGACTCACTTTTTCTAACGAACTC 390539 Query 44243 ATAAGTCGTGATGA 44256 || ||||| ||||| Sbjct 390540 ATCAGTCGAGATGA 390553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397075804520440