Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq998 91.5 2e-13 seq104 82.4 1e-10 >seq998 Length=117795 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||| | ||||||||||| | ||| | || || ||||| Sbjct 99109 CTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCC 99168 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 |||||||| || || |||||| |||||| | |||||||| |||||||| || || || Sbjct 99169 CAAATTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTGCC 99228 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| ||||| |||| || || || | ||| Sbjct 99229 AGTCTCTGTCTGGGATTCGATGATGGCATACCA 99261 >seq104 Length=2005322 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | ||| |||||||| ||||| || || ||||| || |||| ||||| Sbjct 1841354 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1841295 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || ||||||||||| || || || ||||| Sbjct 1841294 TCAGCCAAAAGATAGCAGCA-AACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAG 1841236 Query 122797 GCAA 122800 |||| Sbjct 1841235 GCAA 1841232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627415837804800