Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1065 156 1e-32 seq1650 150 5e-31 seq459 132 1e-25 seq1229 111 5e-19 seq76603 95.1 4e-14 >seq1065 Length=1128224 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | || ||||| ||||||||||||||||| || || || || || Sbjct 373610 CATGCCACCTCTCAAGCGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTC 373669 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || || || || ||||| ||||| | | ||||| ||||| Sbjct 373670 AGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGG 373729 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || ||||| ||||| ||||| || || ||||| ||||| | ||| || || Sbjct 373730 AGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTC 373789 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || ||||| ||||| |||||||| Sbjct 373790 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 373840 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || ||||| | || || ||||| Sbjct 373401 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCC 373460 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| | | ||||| ||||||||||| || ||||| ||| Sbjct 373461 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 373520 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || ||||| || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 373521 TGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 373580 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| ||||| |||||||| Sbjct 373581 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 373612 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| || || || || || || || ||||| | || || ||||| Sbjct 373857 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCC 373916 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| | | ||||| ||||||||||| || ||||| ||| Sbjct 373917 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 373976 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || ||||| || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 373977 TGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 374036 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| ||||| |||||||| Sbjct 374037 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 374068 >seq1650 Length=685912 Score = 150 bits (166), Expect = 5e-31 Identities = 360/537 (67%), Gaps = 8/537 (1%) Strand=Plus/Plus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 ||||| ||||| | || ||||| || || ||||| || | || || ||||||| || Sbjct 567057 CTTATCTTTGACCTTGGAGGTGGCACCTTCGATGTGTCCATTCTGACTATTGAAGATGGC 567116 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || ||||| || ||| | ||||| ||||| || || || ||||||||||| ||||| || Sbjct 567117 ATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACCTGGGTGGAGAAGACTTTGACAAC 567176 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA 349950 || | || || || | || || ||||| ||||| || | || || | || Sbjct 567177 CGCATGGTCAACCACTTCATCGCTGAGTTCAAGCG-CAAGCACAAGAAAGACATCAGTGA 567235 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || |||||| | |||||||| | ||||| || ||||| || |||||| || | || Sbjct 567236 GAACAAGAGAGCAGTTCGTCGCCTTCGCACTGCATGCGAACGCGCGAAGCGTACCCTGTC 567295 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | || || || ||| ||||| |||||||| ||| |||| || |||| | Sbjct 567296 GTCCAGCACGCAGGCCAGTATCGAAATCGATTCTCTCTATGAGGGCATTGACTTCTACAC 567355 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATG 350128 ||| || || | ||||| |||||||| || | | || || || | | || || Sbjct 567356 ATCCATCACCAGAGCTCGCTTTGAAGA--GCTGAACGCCGACCTGTTCCGTGGCACCCTG 567413 Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188 ||||| || || || | | ||||| || | |||| |||||| | || | Sbjct 567414 GATCCCGTAGAGAAGGCCCTGCGGGATGCCAAGCTAGACAAATCTCAGATCCACGACATC 567473 Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248 || | || ||||| || || ||||| ||||| | || | | || || || || Sbjct 567474 GTGCTGGTCGGTGGCTCCACTCGTATCCCAAAGATCCAGAAACTCCTGCAGGATTTCTTC 567533 Query 350249 AATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 ||||||||||| | | ||| | || ||||| ||||||||||| || |||||||| Sbjct 567534 AATGGCAAAGAGCTGAACAAGAGC-ATCAATCCCGATGAAGCTGTAGCTTATGGTGC 567589 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | ||||||||||||||||| || || ||||||| || Sbjct 566789 ACTGTTACTAATGCTGTGGTCACTGTACCAGCCTATTTCAACGACTCCCAGCGCCAGGCC 566848 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | || || || |||| || ||||| || || Sbjct 566849 ACAAAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCGACA 566908 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 || || || || || ||||| || || || Sbjct 566909 GCAGCTGCTATAGCCTATGGTCTGGACAA 566937 Score = 95.1 bits (104), Expect = 4e-14 Identities = 117/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 566527 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGACCAAAA 566583 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| ||||| ||||| || | ||| | || ||||| ||||||||||| || || Sbjct 566584 GTGCAGGTGGAATACAAAGGAGAG-ACAAAGAGCTTCTACCCAGAAGAAATTTCTTCCAT 566642 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||||||||||||| Sbjct 566643 GGTTTTAACCAAAATGAAGGAAATTGCTGAAGCATAT 566679 >seq459 Length=1799516 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||||||||| || || || || || | || ||||||||| Sbjct 774483 AGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 774424 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||||||||| || | ||||| || || ||||| ||||| || ||| Sbjct 774423 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 774364 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || || | || | ||| Sbjct 774363 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTC 774304 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | || || ||||| ||||||||| Sbjct 774303 TTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 774271 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| ||||| || || || || || || || || || | || ||||||||| Sbjct 774255 AGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 774196 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||||||||| || | ||||| || || ||||| || || || ||| Sbjct 774195 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 774136 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || |||||||| | || | ||| Sbjct 774135 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTC 774076 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 774075 TTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 774044 Score = 122 bits (134), Expect = 3e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||||| || || || || || || || | || ||||||||||||| Sbjct 774022 CAAG-TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAA 773964 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| || || || | ||||| || |||||||| || || || ||||| | Sbjct 773963 GCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGA 773904 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | ||| || |||||||| | || | ||||| | Sbjct 773903 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTAC 773844 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || | || || ||||| ||||||||| Sbjct 773843 CTGTCAAGGTCTTGACAAAGATCTGCATT 773815 >seq1229 Length=1352947 Score = 111 bits (122), Expect = 5e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| ||||||||||||||||| || ||||| |||||||| ||||| |||||| | Sbjct 492678 CAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 492619 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||||| || || ||| || | |||||| ||||| || || | ||| || |||| Sbjct 492618 CTTTGCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTAGAGCCAC 492559 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 |||| | || | ||||| |||| | || | | | || |||| | |||||| | Sbjct 492558 CGACAAGAACAATCTCATCAATATCAGACTTCTTCAGGTCAGAGTCTTCCAGAACTTTCT 492499 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | ||| || Sbjct 492498 GAACAGGCTTCATTGT 492483 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | || ||||| ||||| || || || ||| | ||||| | | Sbjct 492537 ATTGATGAGATTGTTCTTGTCGGTGGCTCTACTCGCATCCCCAAAATACAACAACTTGTT 492596 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||||||||| |||||| | |||||||||||||| ||||| || Sbjct 492597 AAAGAGTTCTTCAATGGCAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCC 492656 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||||||||| Sbjct 492657 TATGGTGCAGCTGTTCAGGC 492676 >seq76603 Length=1081 Score = 95.1 bits (104), Expect = 4e-14 Identities = 117/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 749 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGACCAAAA 805 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| ||||| ||||| || | ||| | || ||||| ||||||||||| || || Sbjct 806 GTGCAGGTGGAATACAAAGGAGAG-ACAAAGAGCTTCTACCCAGAAGAAATTTCTTCCAT 864 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||||||||||||| Sbjct 865 GGTTTTAACCAAAATGAAGGAAATTGCTGAAGCATAT 901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513730618505864