Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq1354 129 7e-25 >seq1354 Length=560939 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| |||| | |||| ||||| || ||||| | ||||| | |||||||| Sbjct 35275 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTCTTCATC 35216 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||| ||||||||||||||| |||| || | || || || |||||||| |||||||| Sbjct 35215 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 35156 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 ||||| | ||||| || ||||| ||| ||||||| ||||| Sbjct 35155 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 35115 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 32826 GGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTAT 32885 |||||| | ||||||||||| ||||| ||| | ||||| ||||| || ||||| | ||| Sbjct 33380 GGACAG-CTTTTTTTGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTAT 33322 Query 32886 TACGGATTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTA 32945 ||||||||| | || || ||| || | ||||| || ||||||||| ||| || Sbjct 33321 TACGGATTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTG 33262 Query 32946 ACTATCATACAATTG 32960 || || | |||||| Sbjct 33261 ACCATATTGCAATTG 33247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602589019317120