Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1925 224 1e-53 >seq1925 Length=2542117 Score = 224 bits (248), Expect = 1e-53 Identities = 443/648 (68%), Gaps = 18/648 (3%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||| ||| |||| || ||| ||||| |||||||| || || |||||| |||| Sbjct 2311516 CCGCTGAGTGAGGAGGAGGCCGCGTTCCCCATTGCCTACTCCATAGTCATCCACAACAAA 2311457 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||||||||| |||||| || |||||||||| || || ||| |||||||| || Sbjct 2311456 ATCGAGATGTTCGAGCGGCTCCTGCGGTCCATCTACGCGCCACAAAACGTCTACTGCATC 2311397 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||||| ||| ||||||| | || ||| || ||| |||||||||| ||| Sbjct 2311396 CACGTAGACAGCAAGTCCCCAGCCGCCTTCCAGGAGGCCGTGAGGGCCATCGCCGCCTGC 2311337 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| ||||| ||||| ||| ||| | ||||| || | ||||||| ||| Sbjct 2311336 TTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAGAGGGTGGTCTATGCCTCCTGGTCACGC 2311277 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 ||||||| ||||||| ||||||| ||||||| |||||| |||| | || Sbjct 2311276 CTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCGTGGCGCTAT 2311217 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 | |||||| ||||| | |||||||| |||| |||||| |||||| || || || Sbjct 2311216 GTCCTCAACACCTGCGGCACCGACTTCCCCATCAAAACCAACGCGGAGATGGTTCGCGCC 2311157 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG--GGCAT-GCCCAACCACAAG 14087 || || ||| || ||||| | ||||| |||| | ||| | || || | || Sbjct 2311156 CTCCAGCTGCTGCAGGGGCAGAACAGCATGGAGTCCGAGAAGCCATCGTCCTACAAGCAG 2311097 Query 14088 CTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGC 14147 |||| | | | || | | |||| ||| | || ||| | | | || | | Sbjct 2311096 CTGCGCTGGA--AGTACCA-CCACGAAGTG----GGGGAGGCCATCTCG--CAGACAGCC 2311046 Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207 | | ||| || |||| ||||| ||||| || |||| | ||| ||| | ||| Sbjct 2311045 ACCGAGAAGCAGCCATCGCCACTCAGCTCGCCCATGTTCACGGGCAGCGCGTACGTGGCG 2310986 Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---TCATG 14264 || || |||| |||||| | | || || ||||| || | ||| |||| || | Sbjct 2310985 GTGACGCGGGCCTTCGTGCAGCACATCTTCGAGGAC---CCCGCGGCGCTGCAGTTCCTC 2310929 Query 14265 CACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACC 14312 | ||| | ||||||| |||||||| ||||||||| | ||||||||| Sbjct 2310928 GAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACC 2310881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658092910970880