Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq37 118 9e-22 seq670 82.4 6e-11 >seq37 Length=3134438 Score = 118 bits (130), Expect = 9e-22 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 1777698 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 1777757 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||||||| || |||| | || ||| ||| |||| || || | || || ||||| | Sbjct 1777758 CCCCTCTTCTCTGGTGC-CAAAACCCTGCTTATCCAGGAATTCACGTGATCCATTGGCAT 1777816 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || ||||| |||||||||| |||| ||||| || || Sbjct 1777817 CCCAAATCTTCACACCCTTTGCAGAGAGCTCCTTGGCATTTGTCGAACC 1777865 >seq670 Length=454285 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || | |||||| | | ||| | || ||| || || Sbjct 404615 TTGAGCTCCCTGCTGAGCACTATATTAACTCTGTCTTTTAAAGGACGATGCTTCTCAGGA 404556 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 404555 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 404508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405921734644896