Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq37 114 1e-20 >seq37 Length=3134438 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| ||||||||||| |||||||| | || || ||||| ||||| ||||| |||| Sbjct 1774315 GACATGGGCGATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGCACTCCTAG 1774374 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | |||||||| ||||| |||| || ||||| || ||||| Sbjct 1774375 TCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAGAA 1774434 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 ||||| || | || || || || | |||||||||| Sbjct 1774435 CTGGCAAAGAGCATGACAAGGTGGCAAAGCCATCAGAG 1774472 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || || || | || ||||| ||||| || ||||| || Sbjct 1774472 CTCTGATGGCTTTGCCACCTTGTCATGCTCTTTGCCAGTTCTATGTTCTAAATGGTGAAT 1774413 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||||| |||||||| | || ||||| ||||| |||| ||||| ||||| |||| Sbjct 1774412 TGTCTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTG 1774353 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || || | |||||||| ||||||||||| |||||| Sbjct 1774352 CCAGCTATTCGCTGCTCACATACATGATCGCCCATGTC 1774315 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || ||||| || Sbjct 1777708 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCTTCT 1777767 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | || ||| |||| ||||| || || || || || | || ||||| |||||| Sbjct 1777768 CTGGTGCCAAAACCCTGCTTATCCAGGAATTCACGTGATCCATTGGCATCCCAAATCTTC 1777827 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | ||||||||||||| Sbjct 1777828 ACACCCTTTGCAGAGAGCTCCTTGG 1777852 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 ||||||||||||| | ||| |||||||| ||||| || | || || || || || | Sbjct 1777852 CCAAGGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCCAATGGATCACGTGAATTCC 1777793 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| || | | || ||||| || ||||| || || || || |||| Sbjct 1777792 TGGATAAGCAGGGTTTTGGCACCAGAGAAGAGGGGGATTTGGGACCAGTTTATGGTTTCC 1777733 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 1777732 AGTGGAGGCACTTTGGAGCAGAATA 1777708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447822609759360