Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq459 89.7 3e-13 seq1065 86.0 4e-12 >seq459 Length=1799516 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || ||||| | |||||||| ||| Sbjct 774044 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCCAGT 774103 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| || || | || ||||| || Sbjct 774104 GACACCATTGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 774162 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || ||||| | ||||| | ||| ||||| Sbjct 774163 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAA 774222 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 774223 CATCCAGAAGGAATCCAC 774240 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || || || || ||||| | || || || ||| Sbjct 774271 AATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 774330 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || | | ||||| ||||| | || ||||| | Sbjct 774331 TGACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACC 774389 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| ||||| || || ||||| | ||||| | ||| |||| Sbjct 774390 AGCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACA 774449 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||||||||| || Sbjct 774450 ACATCCAAAAAGAGTCAAC 774468 >seq1065 Length=1128224 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || ||||||||||| ||||| || Sbjct 374299 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCC 374240 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | || || ||||| ||||| | || ||||| Sbjct 374239 AGTGATACCATCGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 374181 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| ||||| || || ||||||| ||||| | || || Sbjct 374180 CCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCTGACTA 374121 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 374120 CAACATCCAGAAGGAATCCAC 374100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337686269311904