Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1065 147 5e-30 seq459 145 2e-29 >seq1065 Length=1128224 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||||||||||||||| || |||| ||||| || | || || | ||| || Sbjct 374084 CAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 374143 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| ||||||||||| Sbjct 374144 TTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 374203 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| |||||||| || || || || || | ||||| || Sbjct 374204 CTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACCTCGAGAGTGATGGT 374263 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 374264 CTTGCCAGTCA 374274 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||||||||||||||| || |||| ||||| || | || || | ||||| Sbjct 373856 CAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 373915 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| | | || ||||| || ||||| || || ||||| Sbjct 373916 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTC 373975 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||||||| || || ||||| || || || || | ||||| || Sbjct 373976 CTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 374035 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| |||| ||||| Sbjct 374036 CTTGCCAGTCAGGGTTTT 374053 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||||||||| ||||| || || |||| ||||| || | || || | ||||| Sbjct 373400 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 373459 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| | | || ||||| || ||||| || || ||||| Sbjct 373460 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTC 373519 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||||||| || || ||||| || || || || | ||||| || Sbjct 373520 CTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 373579 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| |||| ||||| Sbjct 373580 CTTGCCAGTCAGGGTTTT 373597 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| |||||||| ||||| || ||||| |||| ||||| || | || || | ||||| Sbjct 373628 CAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 373687 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| | | || ||||| || ||||| || || ||||| Sbjct 373688 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTC 373747 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||||||| || || ||||| || || || || | ||||| || Sbjct 373748 CTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 373807 Query 225681 CTTGCCCGTCAAAGTTTT 225698 |||||| |||| ||||| Sbjct 373808 CTTGCCAGTCAGGGTTTT 373825 >seq459 Length=1799516 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || |||||||||||||| || |||| ||||| |||| || || | |||||| Sbjct 774256 CAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 774197 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || ||||| || |||||||| Sbjct 774196 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 774137 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || || ||||| || Sbjct 774136 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGT 774077 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 774076 CTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 774044 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || || || |||||||||| ||||| |||| || || | |||||| Sbjct 774484 CAGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 774425 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || ||||| ||||||||||| Sbjct 774424 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 774365 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || || ||||| || Sbjct 774364 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGT 774305 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||| || || | || | |||||| Sbjct 774304 CTTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 774271 Score = 118 bits (130), Expect = 3e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || |||||||||||||| || |||| ||||| |||| || || | |||||| Sbjct 773800 CAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 773741 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| |||||||| || || | || |||||||| ||||| || |||||||| Sbjct 773740 TTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 773681 Query 225621 TTGGATCT 225628 ||||||| Sbjct 773680 CTGGATCT 773673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191331957830672