Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq37 96.9 3e-15 seq670 87.8 1e-12 >seq37 Length=3134438 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || |||||||| || |||| | || Sbjct 1777720 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCTTCTCTGGTGC-CAAA 1777778 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || ||||| ||||| ||||| || ||||| | Sbjct 1777779 ACCCTGCTTATCCAGGAATTCACGTGATCCATTGGCATCCCAAATCTTCACACCCTTTGC 1777838 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 |||||||| |||| ||||| || || Sbjct 1777839 AGAGAGCTCCTTGGCATTTGTCGAACC 1777865 >seq670 Length=454285 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | ||| | || ||| || || Sbjct 404615 TTGAGCTCCCTGCTGAGCACTATATTAACTCTGTCTTTTAAAGGACGATGCTTCTCAGGA 404556 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 404555 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 404508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405774675452368