Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq315 116 5e-21 seq998 100 4e-16 seq77207 93.3 6e-14 >seq315 Length=1270250 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||| ||| || | |||||||||||| ||||| || ||||||| ||| | ||| || Sbjct 390553 TCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCTTC 390494 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 390493 AGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAGC 390435 >seq998 Length=117795 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 95242 TGAAACTCTCCTGAAAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 95301 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || ||||| || ||||||||||||||||||||||| || | | | | || Sbjct 95302 TCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAATGAGAAGGCTG 95361 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 95362 TTTCTGACACCAT 95374 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 ||||||||||| ||||||| || || || ||||| || |||||||| || |||||| Sbjct 96752 TATGTTTCATACGGTCCTTGCTCCTCGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTAA 96811 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAA 77483 ||||| || || ||||||| || || | || || || ||| ||||| || || Sbjct 96812 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 96871 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 | ||||| || |||||||| || ||||| || ||||| ||||| || | ||| Sbjct 96872 CTCATCAGAATGAAAGCATCTGCCAAACCCTGCACACCAATGCCAATGGGACGATG 96927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 ||||| ||||| ||||||||||| ||||| || |||| || || |||| || | || Sbjct 100423 AACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTG 100482 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| || || || ||||| |||||| || |||||||| | || || |||||| | Sbjct 100483 CTCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGATGCCAAG 100541 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || || || || | | ||||||||| Sbjct 100542 GCTCCAGGTAGATGGCAAAAGCTCCAGGTC 100571 >seq77207 Length=1232 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||||||||||||| ||||| ||| || | || || || || ||||| | Sbjct 38 TCCACCCATAGAAATGCATGCTGGTCAGCTTGCCGTAGTTGGGTTCTGCAATGTGAATGT 97 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || ||||| |||||||||||||| || || ||||| || | || || | Sbjct 98 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 157 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||| || | ||||| |||| Sbjct 158 TCTGGGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693987260440320