Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq404 149 9e-31 seq2441 145 1e-29 >seq404 Length=1135484 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || ||||| | ||||| ||| ||| |||||||| || |||||||| Sbjct 1057707 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1057648 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||| || ||||| || || || |||||||| | || || Sbjct 1057647 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 1057588 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || || | ||||| Sbjct 1057587 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 1057528 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | ||| ||||||||||| || || |||||| Sbjct 1057527 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCTATCATC 1057468 Query 9484 TG 9485 || Sbjct 1057467 TG 1057466 Score = 143 bits (158), Expect = 4e-29 Identities = 221/314 (70%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 1059718 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1059659 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || ||||||||||||||||||||| | |||| Sbjct 1059658 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCTGGGG 1059599 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | ||||| | || |||| || ||||| || ||||| || || || | || | || Sbjct 1059598 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCGATTTCTACCATTG 1059539 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || |||||||| || || || ||||| || | || ||| | |||||||||| Sbjct 1059538 TTTCGCCAAAGATGGCACCTGGTCGTGGTTTTTCTACAAGGAGTCCTGGATACAGCTCCA 1059479 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| ||||| || || ||||||||||| Sbjct 1059478 TAGCATCTATGTCTCCATAAAGCTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCTGTAA 1059419 Query 8588 TTATTAATAAAAAA 8601 ||||| || || || Sbjct 1059418 TTATTGATGAATAA 1059405 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || |||||||| || | ||||| || || | |||| ||| Sbjct 1056031 ACCTTTAACACCCATTGGTGTTGGACAGTCACGTCCTACCGGGGGAAGGCTTCTTGTGTA 1055972 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| |||||||| ||| ||||||| || ||| | ||||| ||||| | || Sbjct 1055971 ATAGGAAAGATTGGAATAAGTTTCCCAGTTTTTGTAATTATAGTCACTATTGTAAGTTGG 1055912 Query 10030 AGGGCTGTCAATCAAATCGGATCT 10053 |||||||||||||||| ||||| Sbjct 1055911 TGGGCTGTCAATCAAATGTGATCT 1055888 >seq2441 Length=309800 Score = 145 bits (160), Expect = 1e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8288 CGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCG 8347 ||||| || | |||| |||| ||| |||||| || || || || | | ||| Sbjct 52496 CGGAAGGCCACGTACGGGCACCTCTTCACGTTGAGGCACACCAGCTTCTCCAGGGATGCT 52555 Query 8348 CTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGG 8407 ||||||| ||| | || || ||||||| ||||| ||||||||||||||| ||||| Sbjct 52556 GTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCCGGG 52615 Query 8408 GAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATG 8467 ||||||||| ||| | | || || || ||||| || ||||| || | ||| | ||| Sbjct 52616 GAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAAGGGAGCTCCGATCTCCACCATG 52675 Query 8468 CTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCC 8527 || || ||||| ||| ||||||| |||| || || | || || || | ||| | |||| Sbjct 52676 CTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCC 52735 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || |||| |||||| || || || || || ||||| |||||| ||||||| Sbjct 52736 AGCGCGTCGATGTCTCCATAGAGCTCCTCCAGCTCTGCAGCCTTCTCCTCCTCTCCTG 52793 Score = 118 bits (130), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| || || Sbjct 54840 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGGTGC 54899 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 54900 TCCCGCTTCAGGATGTCGCAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATG 54959 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | || || || |||| ||||| | ||||| || | | | ||| Sbjct 54960 CAGAGCCCCGGCAGGAGCCCGAACACCTCCTGACCCATCGCCAGCTGCTTCTCCTTGGGG 55019 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || || || | |||||| ||| | | || ||||||||||||| |||| || Sbjct 55020 ACGGCAGGCGGGTACACCATGTGGACCGGCGCTTCGGTGACCGAGGGGGGGTACACCTCT 55079 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 55080 CCATCCACCACCT 55092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716173472171520