Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq459 131 4e-25 seq1065 123 6e-23 >seq459 Length=1799516 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || || || || || || |||||| | || || | ||| || | Sbjct 774047 CAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTG--AGCCCAGTG 774104 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| || || || || || ||||||| Sbjct 774105 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGC 774164 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 774165 AGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAACA 774224 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || || ||||| || || | ||||| Sbjct 774225 TCCAGAAGGAATCCACTCTCCATCTCGTGCTGCGCCTCAG 774264 >seq1065 Length=1128224 Score = 123 bits (136), Expect = 6e-23 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || |||||||||||||| || || ||| Sbjct 374065 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGA--GCCCAGTG 374008 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || || || ||||||||||| || || ||||| ||||||| Sbjct 374007 ACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAGC 373948 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| || ||||| | || || | || || ||| Sbjct 373947 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAACA 373888 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || || ||||| || | || ||| Sbjct 373887 TCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGA 373847 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || |||||||||||||| || || ||| Sbjct 373837 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGA--GCCCAGTG 373780 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || || || ||||||||||| || || ||||| ||||||| Sbjct 373779 ACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAGC 373720 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| || ||||| | || || | || || ||| Sbjct 373719 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAACA 373660 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || || ||||| Sbjct 373659 TCCAGAAAGAGTCTACTCTTCACCTTGT 373632 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || |||||||||||||| || || ||| Sbjct 373609 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGA--GCCCAGTG 373552 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || || || ||||||||||| || || ||||| ||||||| Sbjct 373551 ACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAGC 373492 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| || ||||| | || || | || || ||| Sbjct 373491 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAACA 373432 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || ||||| Sbjct 373431 TCCAGAAGGAGTCCACCCTCCACCTTGT 373404 Score = 118 bits (130), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| |||||||| || || ||| Sbjct 374293 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGA--GCCCAGTG 374236 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||| || || ||||| |||||||| ||||| || || || ||||||| Sbjct 374235 ATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAGC 374176 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 374175 AGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCTGACTACAACA 374116 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || || ||||| || | || ||| Sbjct 374115 TCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGA 374075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202520694802672