Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq459 145 7e-30 seq1065 125 7e-24 >seq459 Length=1799516 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | || || | ||| ||||| || ||| |||||||| ||||| |||||||| Sbjct 774270 CCGCCCCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 774211 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| | || || ||||||||||| || || ||||| | ||| ||||| | |||| Sbjct 774210 AGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 774151 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 774150 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 774091 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || ||||| ||||| ||||||||||||||| Sbjct 774090 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 774043 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || || | ||||| ||||| ||| ||||||||| ||||| |||||||| Sbjct 774043 GCCGCCCCTGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 773984 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||| ||||| ||||| | ||| ||||| | || Sbjct 773983 CAGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGG 773924 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 773923 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 773864 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| |||| ||||| || || |||||||| Sbjct 773863 TTCCAAGGTGATGGTCTTACCTGTCAAGGTCTTGACAAAGATCTGCAT 773816 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| || ||| || || ||||| |||||||| ||||||||| Sbjct 774489 AGGCGCAGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGC 774430 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 774429 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 774370 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||| ||||||| || Sbjct 774369 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTG 774310 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || |||||||| Sbjct 774309 ATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCAT 774272 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | || || | ||| ||||| || ||| |||||||| ||||| |||||||| Sbjct 773814 CCGCCCCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 773755 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| | || || ||||||||||| ||||| ||||| | ||| ||||| | ||| Sbjct 773754 AGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGA 773695 Query 41756 ACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 773694 ATGCCCTCCTTGTCC 773680 >seq1065 Length=1128224 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | ||| || || || ||| ||||||||| ||||| ||||| Sbjct 373382 ACGGCCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 373441 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || |||||||| | || || ||||||||||| ||||| |||| | ||| ||||| | Sbjct 373442 AGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGG 373501 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 |||| || ||| |||||| |||||| ||||| | | |||||| || | ||| Sbjct 373502 AGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTC 373561 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || ||||| || || || || ||||||||| Sbjct 373562 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 373613 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| |||||||| ||||| ||||| || ||||||||| |||| || Sbjct 374088 ACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCA 374147 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||||| || ||||||||| | Sbjct 374148 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 374207 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | || || || | ||| ||||| | || || || || Sbjct 374208 ATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACCTCGAGAGTGATGGTCTTG 374267 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| || || ||||||||||| Sbjct 374268 CCAGTCAGGGTCTTCACAAAGATCTGCATGTT 374299 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| |||||||| ||||| ||||| || |||||||| | || || Sbjct 373860 ACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTCC 373919 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| |||| | ||| ||||| | |||| || ||| |||||| | Sbjct 373920 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGG 373979 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | | |||||| || | ||| ||||| | || || || || Sbjct 373980 ATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 374039 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || || || || ||||||||| Sbjct 374040 CCAGTCAGGGTTTTCACAAAGATCTGCATG 374069 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || || || || ||| ||||| ||||| ||||| || |||||||| | || || Sbjct 373631 CACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCCTC 373690 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| ||||| |||| | ||| ||||| | |||| || ||| |||||| Sbjct 373691 CAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTG 373750 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 |||||| ||||| | | |||||| || | ||| ||||| | || || || || Sbjct 373751 GATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 373810 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || || || || ||||||||| Sbjct 373811 GCCAGTCAGGGTTTTCACAAAGATCTGCATG 373841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461850433545600