Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq997 89.7 1e-12 seq993 89.7 1e-12 seq100 89.7 1e-12 seq1324 86.0 1e-11 >seq997 Length=98929 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 58168 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 58227 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 58228 CCCACGTTGGGC 58239 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 58980 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 59039 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 59040 CCCACGTTGGGC 59051 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 59551 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 59610 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 59611 CCCACGTTGGGC 59622 >seq993 Length=129077 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 47949 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 48008 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 48009 CCCACGTTGGGC 48020 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 43096 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 43037 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 43036 CCCACGTCGGGC 43025 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 43794 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 43735 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 43734 CCCACGTCGGGC 43723 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 50177 GCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 50236 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 50237 CCCACGTTGGGC 50248 >seq100 Length=4375964 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| |||| |||||| | |||||||||||||| Sbjct 13941 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCGGGGTCGTGGGTTCGA 13882 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 13881 GCCCCACGTTGGGC 13868 >seq1324 Length=50293 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 |||| |||| |||||||||||||||||||| ||||| ||||||| ||| |||||||| Sbjct 28119 GCTT-CCCGGCTAGCTCAGTCGGTAGAGCGTTAGACTCTTAATCTCAAGGTTGTGGGTTC 28061 Query 165766 GAGCCCCACGATGGGCA 165782 | |||||||| |||||| Sbjct 28060 GTGCCCCACGTTGGGCA 28044 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 |||| |||| |||||||||||||||||||| ||||| ||||||| ||| |||||||| Sbjct 28736 GCTT-CCCGGCTAGCTCAGTCGGTAGAGCGTTAGACTCTTAATCTCAAGGTTGTGGGTTC 28678 Query 165766 GAGCCCCACGATGGGCA 165782 | |||||||| |||||| Sbjct 28677 GTGCCCCACGTTGGGCA 28661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057551726350070