Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq59 113 3e-20 seq207 98.7 7e-16 >seq59 Length=3680066 Score = 113 bits (124), Expect = 3e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | ||||| |||| |||||||||| || | ||||||||| Sbjct 478728 CTTGAGCTCCCTGCTGAGCACTATATTAACTCTGTCTTTTAAAGGACGATGCTTCTCAGG 478669 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| | |||||||||| ||| Sbjct 478668 AATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCTG 478619 >seq207 Length=1524075 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| || ||||| || ||||| | ||| || | Sbjct 1118512 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 1118571 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| |||||| | ||||| | ||| | |||||||| |||||||||| Sbjct 1118572 CCTCTCTGGTGCCAAAACCCTGCTTATCCAGGAATTCACGTGATCCATTGGCATCCCAAA 1118631 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||| ||| Sbjct 1118632 TCTTCACACCCTTTGCAGAGAGCTCCTTG 1118660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361162753175339