Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq16 149 8e-31 seq992 129 7e-25 seq686 102 1e-16 >seq16 Length=6513609 Score = 149 bits (164), Expect = 8e-31 Identities = 201/278 (72%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | | | | | |||||||||||||||||||| | ||||||||||| Sbjct 5763917 GGGCACGCCGTCGGGAGCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCG 5763858 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| || |||||| ||| ||| |||| | ||| |||| ||||||| || Sbjct 5763857 CACGGGCGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGAGGGGTCGTCGTGCGG 5763798 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||||||||| ||||||| ||||||||| || || |||| | |||| ||| Sbjct 5763797 GAAGGGCAGGGCCTCCTTCAGGAAGGTGAAGAGCGGGTGGGCGTCCTTCC--CGTTCACC 5763740 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||| ||||| |||| | | ||||| ||||| || ||||||| | Sbjct 5763739 TCGCACTTCTCGAAGACGGGGAAGTTGGGCTTGTACCCGTTGCCAGGCCGCACGTGCTCC 5763680 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || || ||| |||||| | || ||| || ||||| Sbjct 5763679 AGCGAGCGCAGGATCTCCTCGTTGGTGGCATTCTCCTG 5763642 Score = 149 bits (164), Expect = 8e-31 Identities = 201/278 (72%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | | | | | |||||||||||||||||||| | ||||||||||| Sbjct 5765882 GGGCACGCCGTCGGGAGCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCG 5765823 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| || |||||| ||| ||| |||| | ||| |||| ||||||| || Sbjct 5765822 CACGGGCGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGAGGGGTCGTCGTGCGG 5765763 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||||||||| ||||||| ||||||||| || || |||| | |||| ||| Sbjct 5765762 GAAGGGCAGGGCCTCCTTCAGGAAGGTGAAGAGCGGGTGGGCGTCCTTCC--CGTTCACC 5765705 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||| ||||| |||| | | ||||| ||||| || ||||||| | Sbjct 5765704 TCGCACTTCTCGAAGACGGGGAAGTTGGGCTTGTACCCGTTGCCAGGCCGCACGTGCTCC 5765645 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || || ||| |||||| | || ||| || ||||| Sbjct 5765644 AGCGAGCGCAGGATCTCCTCGTTGGTGGCATTCTCCTG 5765607 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| || || ||| |||||| || | || | || Sbjct 5763541 CCTGGTGGCCGAACTGGTTGCAGGGGAAGCCGAGGACTTGCAGCCCGCGGGGCCCGAAGC 5763482 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | |||||||||||||| | ||| | | || ||| ||| | |||||||| ||||| | Sbjct 5763481 GGCGCTGCAGCTCGTTGAGCTGCAGGAAGTCGCGGGTGGTGGTGCCTCAGAGCGACGCCA 5763422 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCG 83538 ||||| | | |||| ||| |||||| Sbjct 5763421 CGTTCACCACCAGCAGCACCTTGCCCCG 5763394 >seq992 Length=107631 Score = 129 bits (142), Expect = 7e-25 Identities = 244/347 (70%), Gaps = 14/347 (4%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CAG-CGGTGGCTGTACCTG 83113 ||| ||| || |||||||||||||| || || ||| ||| ||| ||||||| | | Sbjct 46095 GAGGAGGCGCTGGATGTCGGGCTCCA--GCTGGGCGGTGGGCAGGCGGGGGCTGTAGCGG 46038 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | ||||||| |||||||||||||||||||| | |||| | Sbjct 46037 CGGAAAGGTTCCCCCTCGGGCCCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGGAG 45978 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT-CGTC 83232 || | ||| || ||| | | || |||| ||| ||| || ||| || || |||| Sbjct 45977 CGCCGCACGGGGCTCCACACCACGAAGCGGGGCTCGGTCATCAG-GTGGTCGGGTTCGTC 45919 Query 83233 GCTAGGCGCCGGCAGG--GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCAC 83288 || || |||||| | || || ||| ||||||||| || || || ||| || | Sbjct 45918 CACCGGGGCGGGCAGGTGGGCTTTC--AGGTAGGCGAAGACGGGGTGGGTGTCCT-GC-C 45863 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 |||| |||| |||||||| ||| || | ||||| |||||||||||| ||| || || | Sbjct 45862 CGTTCACCTGGCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCGCCCCCCGGCCGCA 45803 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 ||||||||||| | | |||||| | || | |||| |||||| Sbjct 45802 CGTGCTTCAGGCAGTTGAGGATCTCCTCGTTGGTGCCGTTCTCCTGG 45756 Score = 116 bits (128), Expect = 5e-21 Identities = 119/153 (78%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||| || || ||||| || ||||| || ||||| ||||||| ||| | ||| | Sbjct 45669 CCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGCGGG--TAG-C 45613 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | |||||||| ||| | ||| ||||| ||||| |||||| | |||||||| ||||| | Sbjct 45612 GAGCCTGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGCGACGCCA 45553 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||||||||||||| | || |||||||| |||| Sbjct 45552 CGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 45520 >seq686 Length=293041 Score = 102 bits (112), Expect = 1e-16 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 83243 GGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGC 83300 ||||||||||| ||||||| ||||||||| || || |||| ||||| ||||||| Sbjct 215160 GGCAGGGCCTCCTTCAGGAAGGTGAAGAGCGGGTGGGCGTCCTT--CCCGTTCACCTCGC 215217 Query 83301 ACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGG 83360 |||||||||||| ||||| |||| | | ||||| ||||| || ||||||| ||| | Sbjct 215218 ACTTCTCGAAGACGGGGAAGTTGGGCTTGTACCCGTTGCCAGGCCGCACGTGCTCCAGCG 215277 Query 83361 AAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | ||| |||||| | || ||| || ||||| Sbjct 215278 AGCGCAGGATCTCCTCGTTGGTGGCATTCTCCTG 215311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608643923513560