Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq432 170 2e-37 seq112 149 6e-31 seq452 129 6e-25 seq534 93.3 4e-14 seq157 87.8 2e-12 >seq432 Length=995019 Score = 170 bits (188), Expect = 2e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| ||||||||| | || || ||| | Sbjct 871282 AAACATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAACC 871341 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | |||||| || || | ||||| |||||||| ||| |||| Sbjct 871342 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 871401 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || |||||||||||||| |||| |||||||| ||||| Sbjct 871402 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGACGCACCCTGTCTGACTA 871461 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| | || |||||||| ||| ||||| ||||||| ||| Sbjct 871462 CAACATCCAGAAAGAGTCTACCCTGCATCTCGTGCTGCGCCTGAGGGGGGGC 871513 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| | || || ||| ||| Sbjct 871514 ATGCAGATCTTTGTCAAGACCTTGACAGGTAAGACCATCACCTTGGAAGTTGAACCCAGT 871573 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| |||||||| Sbjct 871574 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 871633 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || |||||||||||||| |||| |||||||| |||||||||| Sbjct 871634 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGACGCACCCTGTCCGACTACAAC 871693 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| | ||| ||||| | ||||||||| Sbjct 871694 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTCAGGGGCGGC 871741 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || ||||| ||||||||| | || ||||| ||| Sbjct 871969 AATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 872028 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| |||||||| ||| | ||||| Sbjct 872029 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 872088 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 872089 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 872148 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || ||| | || |||||||| ||| ||||| ||||||| || Sbjct 872149 CATCCAAAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 872196 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 871742 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCCAGT 871801 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || || || ||| | || ||| Sbjct 871802 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGATCAG 871861 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 871862 CAGAGGCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCCGACTACAAC 871921 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| ||| ||||| | || ||||| Sbjct 871922 ATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCGCCTCAGAGGCGG 871968 >seq112 Length=2547449 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || ||| | Sbjct 1632790 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1632731 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| || ||||||||| | ||||| Sbjct 1632730 GATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 1632672 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||| ||||| Sbjct 1632671 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGATTACAA 1632612 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || ||| ||||| ||||||| ||| Sbjct 1632611 CATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 1632563 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 1633702 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1633643 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | |||||||||||||| || | |||||| Sbjct 1633642 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 1633583 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| |||||||| || | |||||||| || |||||| Sbjct 1633582 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAAC 1633523 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| |||||||| ||| ||||| |||| || ||| Sbjct 1633522 ATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 1633475 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || ||| Sbjct 1633018 ATGCAGATTTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1632959 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | |||||||||||||| || | |||||| Sbjct 1632958 GACACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 1632899 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| |||||||| || | |||||||| || |||||| Sbjct 1632898 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAAC 1632839 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| |||||||| ||| ||||| |||| || ||| Sbjct 1632838 ATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 1632791 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 1633246 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1633187 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | |||||| Sbjct 1633186 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 1633127 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| ||||| || || | ||||||||| ||| |||||| Sbjct 1633126 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGATTACAAC 1633067 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || || || ||| ||||| ||||||| ||| Sbjct 1633066 ATCCAGAAGGAATCCACCCTCCACCTGGTGCTGCGCCTGAGGGGTGGC 1633019 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| | Sbjct 1633474 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 1633415 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| || ||||| ||| | ||||| Sbjct 1633414 GATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 1633356 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 1633355 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1633296 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || || || || ||| ||||| |||| || ||| Sbjct 1633295 CATCCAGAAAGAGTCTACTCTTCACCTTGTGCTGCGCCTGAGAGGTGGC 1633247 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 1633933 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 1633874 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | | | |||| | |||| || || | ||||| || ||||| || | || Sbjct 1633873 AGCGATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGA 1633815 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| ||||| || |||| ||||||||| ||||| Sbjct 1633814 CCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCTGACTA 1633755 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || || || || ||||| |||| || ||| Sbjct 1633754 CAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGAGAGGTGGC 1633703 >seq452 Length=654506 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||| ||||| | |||||||| || |||| ||| Sbjct 328676 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCGTGTTCCCCATCCAGTACCACGAC 328735 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| |||||||||||||| |||||||| | ||||||||| Sbjct 328736 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACGGCGGAGGAGGTG 328789 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/123 (77%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACA-CGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCA 116742 |||| ||||| || || |||| | ||| |||||||| |||| ||| | | ||| | Sbjct 328959 AGGTCGACCTCTCAAAAGACATCCAGC-ACTGGGAGTCGCT-GAAGCCCGAGGAGAAATA 329016 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| |||||| || ||||| || || |||||||||||||| ||||||||||| || Sbjct 329017 CTTCATCTCGCACGTCCTCGCCTTCTTTGCTGCCAGCGACGGCATTGTCAACGAGAACCT 329076 Query 116803 GGT 116805 ||| Sbjct 329077 GGT 329079 >seq534 Length=463462 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | | |||||||| || ||||| || |||||||| || ||||||||| Sbjct 274515 GAGCCTCTCCTCAGAAAAAACCCCCGTCGCTTCGTCATCTTCCCCATCCAGTACCCGGAC 274574 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| ||||||||| ||||| |||| || || ||||| | ||||||||| Sbjct 274575 ATATGGAAAATGTACAAACAGGCCCAGGCCTCCTTTTGGACGGCGGAGGAGGTG 274628 >seq157 Length=1983938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||||||||| |||||||| || | ||| Sbjct 100816 GGGATCCCCCCCGACCAGCAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 100875 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 || ||| |||||||||||||||||| Sbjct 100876 ACGCTCGCCGACTACAACATCCAGAA 100901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515089822018640