Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq432 116 3e-21 seq112 116 3e-21 >seq432 Length=995019 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||| |||||||| ||| || |||||| ||| || ||||| || ||| Sbjct 872166 GTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 872107 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || || || |||||||||||||| || || || Sbjct 872106 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 872047 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||||||||| | ||| | || ||||| |||| || Sbjct 872046 ACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTC 871987 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 871986 TTGACAAAGATCTGCAT 871970 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || || || || |||||||| ||| || |||||| || || ||||| Sbjct 871944 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCAAGCTGC 871885 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| || | ||||||||| || || || || |||||||| || || Sbjct 871884 TTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATCTTG 871825 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| || ||| || || | ||| | || ||||| ||| Sbjct 871824 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTC 871765 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||||||||||||| Sbjct 871764 AGGGTCTTCACAAAAATCTGCATG 871741 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||||| || || |||||||| ||| || ||||| || Sbjct 871726 CAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 871667 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| |||| || | |||||| || || || |||||||||||||| Sbjct 871666 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 871607 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || || || || | ||| | || Sbjct 871606 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGT 871547 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || |||| || || ||||| ||||||||| Sbjct 871546 CTTACCTGTCAAGGTCTTGACAAAGATCTGCATG 871513 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||||||||| || |||||||| || || ||||| || || |||||||| ||| Sbjct 871482 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGTTTGCCA 871423 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || || || |||||||||||||| || || || Sbjct 871422 GCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 871363 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || || || || | ||| | || ||||| ||||| || Sbjct 871362 ACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 871303 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 871302 TTGACGAAGATCTGCATG 871285 >seq112 Length=2547449 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || || || || || |||||||||||| || |||||| ||| Sbjct 1633034 CAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGCCCATC 1633093 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || |||| || | |||||| || || || ||||| |||||||| Sbjct 1633094 TTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 1633153 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| || ||| ||||| | ||| | || Sbjct 1633154 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 1633213 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 1633214 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1633247 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || ||||||||||| || ||||| |||||| ||||| || ||| Sbjct 1633506 GTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCA 1633565 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| || ||||| |||||||| ||||| || || || Sbjct 1633566 GCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 1633625 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||| ||||| | ||| | || ||||| ||||| || Sbjct 1633626 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1633685 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 1633686 TTCACGAAGATCTGCATG 1633703 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || ||||||||||| || ||||| |||||| ||||| || ||| Sbjct 1632822 GTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCA 1632881 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | |||||| || ||||| |||||||| ||||| || || || Sbjct 1632882 GCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTC 1632941 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| || ||| ||||| | ||| | || ||||| |||| || Sbjct 1632942 ACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTC 1633001 Query 118722 TTTACAAAAATCTGCATG 118739 || || |||||||||||| Sbjct 1633002 TTCACGAAAATCTGCATG 1633019 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||| | ||||||||||| || |||||||| || || |||||| ||| Sbjct 1633262 CAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1633321 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || |||| || | |||||| || || || ||||| |||||||| Sbjct 1633322 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 1633381 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | ||| || || ||| ||||| | ||| | || Sbjct 1633382 CTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGT 1633441 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 1633442 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1633475 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || || || || || |||||||||||| || ||||| ||| Sbjct 1632578 CAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATC 1632637 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || || |||| || | |||||| || || || ||||| |||||||| Sbjct 1632638 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 1632697 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | ||| || || ||| ||||||| ||| | || Sbjct 1632698 CTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCGAGGGTGATGGT 1632757 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || || || ||||||||| Sbjct 1632758 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1632791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433724183269588