Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq75 141 9e-29 >seq75 Length=3243839 Score = 141 bits (156), Expect = 9e-29 Identities = 132/170 (78%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 125346 CGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGGCCGCCGCTCGCCG 125405 ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||| Sbjct 1056052 CGGCGCGCAGGAGCGGAAGAAGGGCCGCTCGCGCCGCTCCAGCTCGGCCGCCGCCCGCCG 1055993 Query 125406 NNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCC--TTCCTTGCCGCAGCAGTGCTGGAAG 125463 || | || |||||| || | | || ||||| || |||||||||| Sbjct 1055992 CAGCGTGGCCGCCGTGGCGCTGGGCGGCAGCGCGGTGCC--GCCGCCGCGGTGCTGGAAG 1055935 Query 125464 TAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGGC 125513 ||||||| |||||||| |||||| || |||||||| ||| | | |||||| Sbjct 1055934 TAATCCTGCAGCAGCAGCGCCGTCTCCTCCTTCAGCGAGCCCGGCATGGC 1055885 Score = 129 bits (142), Expect = 6e-25 Identities = 129/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| |||||||| ||||||||||||||||| Sbjct 1055885 GCCATGCCGGGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGCAGGATTACTTCCAGCAC 1055944 Query 157143 TGCTGCGGCAAGGAA--GGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNN 157200 || ||||| || | | || |||||| || | |||||||| ||||||||| || Sbjct 1055945 CGCGGCGGC--GGCACCGCGCTGCCGCCCAGCGCCACGGCGGCCACGCTGCGGCGGGCGG 1056002 Query 157201 NNNNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCG 157250 |||||||| ||| |||||||||| ||||||||||||||| Sbjct 1056003 CGGCCGAGCTGGAGCGGCGCGAGCGGCCCTTCTTCCGCTCCTGCGCGCCG 1056052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509056137532800