Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq534 96.9 3e-15 seq452 86.0 6e-12 >seq534 Length=463462 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || || || || || | | || ||| || | | || Sbjct 283310 AAAAATCTGCATCCAGAGTGAAAACGTTGTCCATTGTTTCTGCCATGACAGCAAAACGTT 283251 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 283250 GATATTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 283191 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 283190 TGAAATCAAAAGGATTTTCTG 283170 >seq452 Length=654506 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || | ||| || | ||||| ||||| || || || ||||||| ||||| ||| || Sbjct 331774 TCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCTTC 331715 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 331714 AGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAGCT 331655 Query 16379 AC 16380 || Sbjct 331654 AC 331653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462395857455400