Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq30 421 5e-113 seq2 96.9 2e-15 >seq30 Length=4989583 Score = 421 bits (466), Expect = 5e-113 Identities = 765/1105 (69%), Gaps = 26/1105 (2%) Strand=Plus/Plus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| | | ||||||||| | ||| | ||||| ||||| | Sbjct 2267030 ATCAACTGCTCGGGGGTTGTCAGCGGGGACCAGCAGGCAATCCAGCAGGCGCTCCTCAGC 2267089 Query 107583 AACCTGGAAGT--GAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAA 107640 |||||||| | ||| ||||| | | |||| ||| | | | ||||| ||||| | Sbjct 2267090 AACCTGGAGCTTAGAAACAAAAGGGAACCCCTCACACCCGAAGCA--TACCTGAACATGA 2267147 Query 107641 CCAGAGACTGTGAGC-GCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGT 107696 | || ||||| ||| ||||||||| ||| || ||| | ||||||| |||||| Sbjct 2267148 CAAGGGACTGC-AGCAGCTTCAAGGAGACCC---GGCGCTTCCTGGAGTTCCCGCTGAGT 2267203 Query 107697 AAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAAC 107756 | || ||| | ||||||||||||||||| || || |||| | || || || | Sbjct 2267204 GAGGAGGAGGCTGCGTTCCCCATTGCCTACTCCATAGTCATCCACAACAAAATCGAGATG 2267263 Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816 || || ||||| ||||| || | || || |||||| | ||||| ||||||| || Sbjct 2267264 TTCGAGCGGCTCCTGCGGTCCATCTACATGCCACAGAACGTCTACTGCATCCACGTAGAC 2267323 Query 107817 GTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876 |||||||||| | ||| | ||||| || | |||||| ||||||||||||| Sbjct 2267324 AGCAAGTCCCCAGCCGCCTTCCAGGAGGCCGTGAGGGCCATCGCCGCCTGCTTCCCCAAC 2267383 Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936 ||||| ||||||| ||| |||||| |||||||||||||| | |||| ||| Sbjct 2267384 GTCTTTGTGGCCAGCCGCCTGGAGAGGGTGGTCTATGCCTCCTGGTCACGCCTGCAGGCT 2267443 Query 107937 GACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 ||||| ||||| ||| | ||| |||| |||||| | ||||||||| || | || || Sbjct 2267444 GACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCTGTGCCATGGCGCTATGTCCTCAAC 2267503 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATG 108056 || ||||| || ||||||||||| || ||||| || |||||||||| |||||| || || Sbjct 2267504 ACCTGCGGCACCGACTTCCCCATCAAAACCAACGCGGAGATGGTCCGCGCCCTCCAGCTG 2267563 Query 108057 TTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa---TCGC 108113 || |||| ||||||| |||||||| ||| || || |||| | || | ||| Sbjct 2267564 CTGCAGGGGCAGAACAGCATGGAGTCCGAGAAGCCATC---GTCCTACAAGCAGCTGCGC 2267620 Query 108114 TGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAA--GATGAAGGACC 108171 ||||| |||| | | || ||| || | | | | | |||| | || |||| | | Sbjct 2267621 TGGAAGTACCACCACGAAGTGGGGGAGGCCATCT-CGCAGACAGCCACCGA-GAAGCAGC 2267678 Query 108172 CTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCT 108231 | | || | | ||||||||||| || | || || | | || | || |||| Sbjct 2267679 CGTCGCCACTCAGCTCGCCCATGTTCACGGGCAGCGCGTACGTGGCGGTGACGCGGGCCT 2267738 Query 108232 TTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACA 108291 | || || || |||| || |||| | | | | | || |||| ||| |||| Sbjct 2267739 TCGTGCAGCACATCTTCGAGGACCCCGCGGCGCTGCGGTTCCTCGAGTGGGCCAAGGACA 2267798 Query 108292 CCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGG 108349 |||| ||||||||||| ||| ||||||||||||| | |||||| ||| | |||| || Sbjct 2267799 CCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCACCCGCGTGC-CCG-GCGTGCCGGG 2267856 Query 108350 CTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGT 108409 | | | || | || ||||| | |||| ||||||| ||| | || | || || Sbjct 2267857 CGCCCTGCCCCACAACGACAAGTTCGAGCTCTCGGACATGAACGCCCTGCCCCGCCTGGT 2267916 Query 108410 CAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGG 108469 |||||||||||||| ||||| || ||||| ||| ||||| || | |||||| | || Sbjct 2267917 CAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGAGCGCCCTACCCGCCCTGCACCGG 2267976 Query 108470 AATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAA 108529 | | | | | ||| ||||||| |||||||||||||||||| |||||| || | | | Sbjct 2267977 CCGCTACCAGCGCGCCGTCTGCATCTACGGGGCCGGGGACCTGCCCTGGATGCTGCGGCA 2268036 Query 108530 CCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTT 108589 || ||||||||||| |||||||| ||||| |||||| ||| || | | |||||| | Sbjct 2268037 GCACCACCTCTTGGCCAACAAGTTCGACCCCCAGGTGGACGATGCCGCCATCCAGTGCCT 2268096 Query 108590 AGAAGAGTACCTACGTCATAAGGCC 108614 || ||| |||| || || | |||| Sbjct 2268097 CGAGGAGCACCTGCGCCACAGGGCC 2268121 >seq2 Length=12866156 Score = 96.9 bits (106), Expect = 2e-15 Identities = 224/331 (68%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 108231 TTTGTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAGA 108289 ||||| ||||| | ||||| | | | |||||| || | | |||| |||| ||||| Sbjct 10705712 TTTGTAGAACATATATTAGAAAGCAGCAAAATCCTCAA-ATTTATTGAGTGGGCAAAAGA 10705770 Query 108290 CACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCCTG 108348 || || ||||| || ||| |||| ||||| || ||||| | ||| || | | || | Sbjct 10705771 TACTTACAGCCCTGATGAATACCTGTGGGCAACGATTCAGAGAA-TCCCTGAAGTCCCCG 10705829 Query 108349 GCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | ||||| || || || ||||| | | || || |||| ||| | |||||| Sbjct 10705830 GTGCTGTTTCTTCTAGTGAC---AAGTACGATGTTTCCGATATGAATGCACTGGCCAGGT 10705886 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | ||||||||||||||| || |||||||| | || || ||||| |||| ||| Sbjct 10705887 TTGTCAAGTGGCAGTACTTTGAAGGAGATGTGTCTAAAGGTGCACCTTACCCACCATGCA 10705946 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 ||| | ||| || | |||| | | ||||| || || ||| | ||||| || | Sbjct 10705947 GCGGAGTTCATGTTCGGTCTGTCTGTGTGTTCGGGGTAGGAGATCTGAAATGGATGCTGC 10706006 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||| ||| |||| || || |||||||| Sbjct 10706007 GAAACCACCACTTCTTTGCTAATAAGTTTGA 10706037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348183531717186