Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq112 123 2e-23 seq432 122 7e-23 >seq112 Length=2547449 Score = 123 bits (136), Expect = 2e-23 Identities = 178/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | || | ||| || ||| |||||||| ||||||||||| Sbjct 1633703 GCCACCTCTCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 1633762 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| || || || || || || || |||| || ||| ||||||||||| Sbjct 1633763 CAGGGTGCGCCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGG 1633822 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | | || | ||| || Sbjct 1633823 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAAC 1633882 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG--CCTCAA 45346 ||| | ||| || |||||||| ||||| |||||||||||||| ||||||||| | ||| Sbjct 1633883 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAACTACAA 1633942 Query 45347 TACACACAGA 45356 ||| ||||| Sbjct 1633943 AACATACAGA 1633952 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | || | ||||| ||| ||| ||||| |||||||| || Sbjct 1633475 GCCACCTCTCAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 1633534 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| |||| | || ||||| || || || ||||| ||||||| ||| ||||| ||||| Sbjct 1633535 CAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGG 1633594 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| |||||| || || ||| || | | | | |||| | ||| || Sbjct 1633595 AATGCCCTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 1633654 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| ||||| |||||||| ||||| |||||| Sbjct 1633655 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1633703 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | || | ||||| ||| ||| ||||| |||||||| || Sbjct 1632791 GCCACCTCTCAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 1632850 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| |||| | || ||||| || || || ||||| ||||||| ||| ||||| ||||| Sbjct 1632851 CAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGG 1632910 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| |||||| || || ||| || | | | |||| | ||| || Sbjct 1632911 AATGCCCTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAAC 1632970 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| |||||||| || || |||||| Sbjct 1632971 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAAATCTGCATG 1633019 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| ||| || ||| |||||||| |||||||| ||| Sbjct 1633019 GCCACCCCTCAGGCGCAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGA 1633078 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || || || || || || || || |||| || ||| ||||| || || Sbjct 1633079 CAGGGTGCGCCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 1633138 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | |||| | ||| || Sbjct 1633139 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAAC 1633198 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 1633199 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1633247 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | || | ||| || || ||| ||||| ||||||||||| Sbjct 1633247 GCCACCTCTCAGGCGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 1633306 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| || ||| ||||| || || Sbjct 1633307 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 1633366 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | | || | ||| || Sbjct 1633367 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAAC 1633426 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 1633427 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1633475 >seq432 Length=995019 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 871722 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 871663 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| ||||| || || | |||||||||||| Sbjct 871662 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 871603 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | || || |||| ||| || ||||| Sbjct 871602 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTCTTA 871543 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| |||||||| |||||| Sbjct 871542 CCTGTCAAGGTCTTGACAAAGATCTGCATG 871513 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||| ||||| ||||||||||| ||| ||| |||| ||||| ||| Sbjct 871488 TGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGT 871429 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| || ||| ||||| || || | |||||||||||| || || Sbjct 871428 TTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 871369 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | || || |||| ||| || |||||||| ||| Sbjct 871368 GCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTCTTGCCAGTC 871309 Query 45314 AGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 || ||||| || ||||| |||||| |||||| Sbjct 871308 AGGGTCTTGACGAAGATCTGCATGTTTGCCT 871278 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| ||| ||| |||| || || || || || ||||| Sbjct 871932 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAG 871873 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | ||| ||||||||| || || ||| || | Sbjct 871872 ATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 871813 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| || |||| ||| || |||||||| ||||| ||||||||| Sbjct 871812 TCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 871753 Query 45326 AAGATTTGCATG 45337 || || |||||| Sbjct 871752 AAAATCTGCATG 871741 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||| || || |||||||||||| ||| ||| | || ||||| || Sbjct 872172 TGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 872113 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| || ||| ||||| || || | |||||||||||| || || Sbjct 872112 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTG 872053 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||| Sbjct 872052 GCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTC 871993 Query 45314 AGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 | ||||| |||||||| ||||| ||||| Sbjct 871992 AAGGTCTTGACAAAGATCTGCATTCCGCCTC 871962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394978471886869